Factsheet for PGSC0003DMT400035649

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400065786
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT3G59920.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g015860.2.1	Tomato	extracellular	99.1	99.1
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	90.77	90.77
KRH59137	Soybean	endoplasmic reticulum	90.09	90.09
VIT_05s0094g01550.t01	Wine grape	cytosol	88.74	88.74
GSMUA_Achr7P23620_001	Banana	cytosol	88.06	88.46
Os05t0304400-01	Rice	plasma membrane	86.94	86.74
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	86.94	86.74
GSMUA_Achr6P18380_001	Banana	cytosol	87.16	86.58
KXG22017	Sorghum	cytosol	86.49	86.29
EES18242	Sorghum	cytosol	86.26	86.07
HORVU1Hr1G064490.8	Barley	cytosol	86.49	85.91
TraesCS1A01G260900.1	Wheat	cytosol	86.04	85.84
TraesCS1D01G260900.1	Wheat	cytosol, golgi	85.59	85.39
TraesCS1B01G271700.1	Wheat	cytosol	85.59	85.39
TraesCS1A01G261000.1	Wheat	cytosol	85.36	84.98
TraesCS1B01G271800.2	Wheat	cytosol, golgi	84.91	84.53
Zm00001d010255_P001	Maize	cytosol, extracellular	86.04	84.14
CDY17885	Canola	cytosol	83.33	83.33
CDX98399	Canola	cytosol	83.33	83.33
CDX79782	Canola	cytosol	83.33	83.33
CDX67817	Canola	cytosol	83.33	83.33
Bra004805.1-P	Field mustard	cytosol	83.33	83.33
Bra003395.1-P	Field mustard	cytosol	83.11	83.11
EER98346	Sorghum	cytosol	83.33	82.96
AT3G59920.1	Thale cress	cytosol	82.66	82.66
CDY45775	Canola	cytosol	82.66	82.66
AT2G44100.1	Thale cress	cytosol	82.66	82.47
TraesCS5A01G041100.1	Wheat	cytosol	82.66	82.47
TraesCS5B01G042400.1	Wheat	cytosol	82.66	82.47
CDX89038	Canola	cytosol	82.43	82.43
Bra014523.1-P	Field mustard	cytosol	82.43	82.43
TraesCS5D01G048100.1	Wheat	cytosol	82.21	82.02
Os07t0271000-01	Rice	plasma membrane	82.21	81.84
Zm00001d010251_P003	Maize	cytosol	86.04	81.62
Bra007493.1-P	Field mustard	cytosol	81.53	81.35
CDY05962	Canola	cytosol	80.86	80.86
GSMUA_Achr10P...	Banana	cytosol	80.18	80.18
CDX71860	Canola	cytosol	73.2	79.46
HORVU1Hr1G064480.1	Barley	cytosol	78.6	78.25
Zm00001d007315_P001	Maize	cytosol	31.31	78.09
Zm00001d005498_P001	Maize	cytosol	83.33	74.9
Zm00001d038200_P002	Maize	plastid	84.91	74.21
TraesCS1D01G261000.1	Wheat	golgi	85.14	72.41
HORVU5Hr1G009840.1	Barley	cytosol	82.88	67.4
Zm00001d009786_P001	Maize	plastid	45.72	59.18
Zm00001d011867_P001	Maize	cytosol	47.52	57.65
Zm00001d016318_P002	Maize	cytosol	33.33	52.3
HORVU2Hr1G104740.2	Barley	mitochondrion	10.59	50.0
HORVU7Hr1G075170.1	Barley	mitochondrion	12.16	49.09
PGSC0003DMT400003853	Potato	peroxisome	25.23	20.25

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:102591805	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	ProteinID:ABB87112
ProteinID:ABB87112.1	EMBL:DQ241841	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234
GO:GO:0050790	InterPro:IPR036188	UniProt:M1B2L7	PFAM:PF00996	EnsemblPlantsGene:PGSC0003DMG400013714	PGSC:PGSC0003DMG400013714
EnsemblPlants:PGSC0003DMT400035649	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	InterPro:RabGDI
SUPFAM:SSF51905	UniParc:UPI0002962949	RefSeq:XP_006351084.1	:	:	:

Description

GDP dissociation inhibitor [Source:PGSC_GENE;Acc:PGSC0003DMG400013714]

Coordinates

chr8:+:8445422..8451949

Molecular Weight (calculated)

49461.1 Da

IEP (calculated)

5.514

GRAVY (calculated)

-0.284

Length

444 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLVQ LWKRFKGSDK PPAELGSSRD YNVDMIPKFI MANGALVRVL IHTDVTKYLS
101: FKAVDGSFVY NKGKVHKVPA TDMEALKSPL MGIFEKRRAR KFFIYVQDYK ESDPKTHEGM DLTKVTTREL IAKYGLDDNT VDFIGHALAL HRDDRYLDEP
201: AVDTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVCGVT SEGETAKCKK VVCDPSYLPS KVRKVGKVAR
301: AIAIMSHPIP NTSESHSVQI ILPQKQLGRK SDMYLFCCSY THNVAPKGKF IAFVSTEAET DNPENELKPG VSLLGPVDEI VYETYDRSEP VNECTLDNCF
401: VSTSYDATTH FESTVDDVLN LYTKITGKVL DLNVDLSAAS AAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.