CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12950
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	EES12950	AT1G14340.1	21798944
AT3G59920.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	94.61	94.61
KXG22017	Sorghum	cytosol	94.61	94.61
Os05t0304400-01	Rice	plasma membrane	94.38	94.38
Zm00001d010251_P003	Maize	cytosol	98.2	93.38
GSMUA_Achr7P23620_001	Banana	cytosol	88.76	89.37
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	87.64	87.84
KRH59137	Soybean	endoplasmic reticulum	87.42	87.61
Solyc12g017570.1.1	Tomato	plastid	86.97	87.16
VIT_05s0094g01550.t01	Wine grape	cytosol	86.07	86.26
PGSC0003DMT400035649	Potato	cytosol	86.07	86.26
GSMUA_Achr6P18380_001	Banana	cytosol	86.52	86.13
Solyc08g015860.2.1	Tomato	extracellular	85.84	86.04
EER98346	Sorghum	cytosol	84.94	84.75
Bra004805.1-P	Field mustard	cytosol	84.49	84.68
CDY17885	Canola	cytosol	84.49	84.68
CDX67817	Canola	cytosol	84.49	84.68
CDX98399	Canola	cytosol	84.49	84.68
CDX79782	Canola	cytosol	84.49	84.68
AT3G59920.1	Thale cress	cytosol	84.27	84.46
CDY45775	Canola	cytosol	84.27	84.46
Bra003395.1-P	Field mustard	cytosol	84.27	84.46
CDX89038	Canola	cytosol	84.04	84.23
Bra014523.1-P	Field mustard	cytosol	84.04	84.23
AT2G44100.1	Thale cress	cytosol	84.04	84.04
Bra007493.1-P	Field mustard	cytosol	82.92	82.92
CDY05962	Canola	cytosol	82.47	82.66
CDX71860	Canola	cytosol	75.28	81.91
EER92083	Sorghum	cytosol	81.12	80.76
GSMUA_Achr10P...	Banana	cytosol	79.55	79.73
KXG32246	Sorghum	cytosol, nucleus, peroxisome	24.94	19.86

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EntrezGene:8085145	UniProt:C5YXW7
EnsemblPlants:EES18242	ProteinID:EES18242	ProteinID:EES18242.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674
GO:GO:0003824	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015031	GO:GO:0016491	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
EnsemblPlantsGene:SORBI_3009G139900	SUPFAM:SSF51905	unigene:Sbi.835	UniParc:UPI0001A8877C	RefSeq:XP_002439812.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:49681638..49688639

Molecular Weight (calculated)

49903.5 Da

IEP (calculated)

5.491

GRAVY (calculated)

-0.289

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GDSTSLNLNQ LWKRFRGEDK PPAHLGASRD YNVDMVPKFM MANGTLVRTL IHTDVTKYLS
101: FKAVDGSYVF SKGKIYKVPA TDMEALKSPL MGLFEKRRAR NFFIYVQDYN EADPRTHQGL DLTRVTTREL ISKYGLSDDT VDFVGHALAL HRDDRYLDEP
201: ALDTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPECKVEF DMEGKVCGVT SEGETAKCKK VVCDPSYLPN KVRKIGRVVR
301: AIAIMSHPIP NTNESHSVQI ILPQKQLGRR SDMYVFCCSY THNVAPRGKF IAFVSAEAET DSPQSELKPG IDLLGSVDEI FYDIYDRYEP VNEPSLDNCF
401: VSTSYDATTH FETTVTDVLN MYTMITGKTV DLSVDLSAAS AAEEY

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.