Factsheet for Os05t0304400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0641400-02
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Os04t0641400-02	AT1G14340.1	21798944
AT3G59920.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	98.2	98.2
TraesCS1D01G260900.1	Wheat	cytosol, golgi	94.61	94.61
KXG22017	Sorghum	cytosol	94.61	94.61
TraesCS1B01G271700.1	Wheat	cytosol	94.61	94.61
EES18242	Sorghum	cytosol	94.38	94.38
TraesCS1A01G260900.1	Wheat	cytosol	94.16	94.16
TraesCS1B01G271800.2	Wheat	cytosol, golgi	93.26	93.05
TraesCS1A01G261000.1	Wheat	cytosol	93.03	92.83
Zm00001d010255_P001	Maize	cytosol, extracellular	93.93	92.07
Zm00001d010251_P003	Maize	cytosol	93.93	89.32
GSMUA_Achr7P23620_001	Banana	cytosol	88.31	88.91
Solyc12g017570.1.1	Tomato	plastid	88.54	88.74
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	88.31	88.51
KRH59137	Soybean	endoplasmic reticulum	88.09	88.29
PGSC0003DMT400035649	Potato	cytosol	86.74	86.94
Solyc08g015860.2.1	Tomato	extracellular	86.29	86.49
CDX79782	Canola	cytosol	86.07	86.26
CDY17885	Canola	cytosol	86.07	86.26
Bra004805.1-P	Field mustard	cytosol	86.07	86.26
VIT_05s0094g01550.t01	Wine grape	cytosol	85.84	86.04
GSMUA_Achr6P18380_001	Banana	cytosol	86.29	85.91
CDX98399	Canola	cytosol	85.39	85.59
CDX67817	Canola	cytosol	85.39	85.59
Zm00001d007315_P001	Maize	cytosol	34.16	85.39
AT2G44100.1	Thale cress	cytosol	85.39	85.39
Bra003395.1-P	Field mustard	cytosol	85.17	85.36
CDY45775	Canola	cytosol	84.94	85.14
CDX89038	Canola	cytosol	84.72	84.91
Bra014523.1-P	Field mustard	cytosol	84.72	84.91
AT3G59920.1	Thale cress	cytosol	84.49	84.68
Bra007493.1-P	Field mustard	cytosol	84.04	84.04
CDY05962	Canola	cytosol	83.37	83.56
Os07t0271000-01	Rice	plasma membrane	83.6	83.41
CDX71860	Canola	cytosol	75.96	82.64
Zm00001d038200_P002	Maize	plastid	93.48	81.89
Os03t0277000-01	Rice	plasma membrane	82.02	81.66
GSMUA_Achr10P...	Banana	cytosol	79.78	79.95
TraesCS1D01G261000.1	Wheat	golgi	93.48	79.69
Zm00001d009786_P001	Maize	plastid	49.21	63.85
Zm00001d011867_P001	Maize	cytosol	51.01	62.02
Zm00001d016318_P002	Maize	cytosol	34.61	54.42
HORVU7Hr1G075170.1	Barley	mitochondrion	13.26	53.64
HORVU2Hr1G104740.2	Barley	mitochondrion	11.24	53.19
Os01t0269100-01	Rice	plasma membrane	16.63	22.91

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EntrezGene:4338357	EMBL:AK073143
ProteinID:BAF17056.1	ProteinID:BAS93252.1	ProteinID:EEE63167.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674
GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	EnsemblPlantsGene:Os05g0304400	EnsemblPlants:Os05t0304400-01	PFAM:PF00996
PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	UniProt:Q0DJB7	InterPro:RabGDI
SUPFAM:SSF51905	UniParc:UPI0000E12421	RefSeq:XP_015639188.1	SEG:seg	:	:

Description

GDP dissociation inhibitor 2, GDP dissociation inhibitor2, GDP dissociation inhibitor protein OsGDI2, GDP-dissociation inhibitor 2Similar to GDP dissociation inhibitor protein OsGDI2. (Os05t0304400-01)

Coordinates

chr5:+:13715958..13720932

Molecular Weight (calculated)

49652.3 Da

IEP (calculated)

5.636

GRAVY (calculated)

-0.273

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GDSTSLNLNQ LWKRFRGEDK PPAHLGSSKD YNVDMVPKFM MANGTLVRTL IHTDVTKYLS
101: FKAVDGSYVF SKGKIHKVPA TDMEALKSPL MGLFEKRRAR NFFIYVQDYN EADPKTHQGL DLTTMTTREL IAKYGLSDDT VDFIGHALAL HRDDRYLNEP
201: AIDTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPDCKVEF DMEGKVCGVT SEGETAKCKK VVCDPSYLPN KVRKIGKVAR
301: AIAIMSHPIA STNDSHSVQI ILPQKQLGRK SDMYVFCCSY THNVAPKGKF IAFVSTEAET DNPQSELKPG IDLLGQVDEL FFDIYDRYEP VNEPSLDNCF
401: VSTSYDATTH FETTVTDVLN MYTLITGKAV DLSVDLSAAS AAEEY

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.