Factsheet for Zm00001d038200_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d002122_P007
Zm00001d026425_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT3G59920.1	Zm00001d026425_P003	AT1G14340.1	21798944
AT3G59920.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0304400-01	Rice	plasma membrane	81.89	93.48
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	81.89	93.48
Zm00001d007315_P001	Maize	cytosol	32.48	92.7
Zm00001d010251_P003	Maize	cytosol	84.84	92.09
Zm00001d010255_P001	Maize	cytosol, extracellular	80.71	90.31
GSMUA_Achr7P23620_001	Banana	cytosol	75.98	87.33
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	75.39	86.26
KRH59137	Soybean	endoplasmic reticulum	75.2	86.04
Solyc12g017570.1.1	Tomato	plastid	75.2	86.04
PGSC0003DMT400035649	Potato	cytosol	74.21	84.91
Solyc08g015860.2.1	Tomato	extracellular	74.02	84.68
VIT_05s0094g01550.t01	Wine grape	cytosol	74.02	84.68
GSMUA_Achr6P18380_001	Banana	cytosol	74.02	84.12
CDX79782	Canola	cytosol	72.83	83.33
CDX98399	Canola	cytosol	72.83	83.33
CDY17885	Canola	cytosol	72.83	83.33
CDX67817	Canola	cytosol	72.83	83.33
Bra004805.1-P	Field mustard	cytosol	72.83	83.33
AT3G59920.1	Thale cress	cytosol	72.64	83.11
CDY45775	Canola	cytosol	72.64	83.11
Bra003395.1-P	Field mustard	cytosol	72.64	83.11
AT2G44100.1	Thale cress	cytosol	72.64	82.92
CDX89038	Canola	cytosol	72.44	82.88
Bra014523.1-P	Field mustard	cytosol	72.44	82.88
Bra007493.1-P	Field mustard	cytosol	72.05	82.25
CDY05962	Canola	cytosol	71.26	81.53
CDX71860	Canola	cytosol	64.96	80.68
Zm00001d029596_P001	Maize	cytosol, extracellular	68.9	78.3
GSMUA_Achr10P...	Banana	cytosol	68.11	77.93
Zm00001d005498_P001	Maize	cytosol	73.82	75.91
Zm00001d009786_P001	Maize	plastid	45.67	67.64
Zm00001d011867_P001	Maize	cytosol	47.83	66.39
Zm00001d016318_P002	Maize	cytosol	32.09	57.6
Zm00001d004622_P001	Maize	cytosol	4.92	34.72
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	4.72	33.33
Zm00001d009201_P001	Maize	cytosol	8.07	24.26
Zm00001d040408_P003	Maize	peroxisome	20.87	19.1
Zm00001d008269_P001	Maize	peroxisome	20.47	18.67

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:103630368	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	UniProt:A0A1D6M4H0
ProteinID:AQK86030.1	ncoils:Coil	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	PFAM:PF00996
PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	SUPFAM:SSF51905	UniParc:UPI000844EBAF	EnsemblPlantsGene:Zm00001d038200
EnsemblPlants:Zm00001d038200_P002	EnsemblPlants:Zm00001d038200_T002	SEG:seg	:	:	:

Description

Guanosine nucleotide diphosphate dissociation inhibitor 2

Coordinates

chr6:-:151393535..151403991

Molecular Weight (calculated)

56799.9 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.274

Length

508 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV AACSLQNGGD DRKVRVSISG FPKPPCLLAS ASRRRMDCGC YWRCCGRGSK GLDNHRTFLK VVVFEVYIND
101: YYGGDSTSLN LNQLWKRFRG EDKPPAHLGA SRDYNVDMVP KFMMANGTLV RTLIHTDVTK YLSFKAVDGS YVFSKGKIYK VPATDMEALK SPLMGLFEKR
201: RARNFFIYVQ DYNEADPRTH QGLDLTRVTT RELIAKYGLS DDTVDFVGHA LALHRDDRYL DEPALDTVKR MKLYADSLAR FQGGSPYIYP LYGLGELPQG
301: FARLSAVYGG TYMLNKPDCK VEFDMEGKVC GVTSEGETAK CKKVVCDPSY LQNKVRKIGR VVRAIAIMSH PIPNTNESHS VQIILPQKQL GRRSDMYVFC
401: CSYTHNVAPR GKFIAFVSAE AETDNPQSEL KPGIDLLGSV DEIFYDIYDR YEPVNEPSLD NCFVSTSYDA TTHFETTVTD VLNMYTMITG KTVDLSVDLS
501: AASAAEEY

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.