Factsheet for Zm00001d040408_P003

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d022251_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	Zm00001d022251_P002	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32246	Sorghum	cytosol, nucleus, peroxisome	86.67	86.05
Zm00001d008269_P001	Maize	peroxisome	83.78	83.48
Zm00001d004622_P001	Maize	cytosol	9.19	70.83
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	9.19	70.83
Zm00001d009201_P001	Maize	cytosol	15.5	50.89
GSMUA_Achr6P03390_001	Banana	peroxisome	43.96	49.59
VIT_04s0044g00070.t01	Wine grape	peroxisome	44.5	44.42
CDY34947	Canola	cytosol, plastid, vacuole	43.78	44.34
CDY05274	Canola	plastid	43.78	43.32
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	42.52	42.68
KRH28917	Soybean	cytosol, peroxisome, plastid	42.34	42.65
AT3G06540.1	Thale cress	cytosol	43.06	42.45
CDY24684	Canola	cytosol	43.24	42.4
PGSC0003DMT400003853	Potato	peroxisome	42.16	42.31
Bra029586.1-P	Field mustard	peroxisome	42.88	41.98
Solyc02g082730.2.1	Tomato	extracellular	41.44	41.67
KRH05675	Soybean	extracellular, vacuole	13.33	37.19
Zm00001d029596_P001	Maize	cytosol, extracellular	20.0	24.83
Zm00001d010255_P001	Maize	cytosol, extracellular	19.1	23.35
Zm00001d016318_P002	Maize	cytosol	11.71	22.97
Zm00001d010251_P003	Maize	cytosol	18.92	22.44
Zm00001d005498_P001	Maize	cytosol	19.28	21.66
Zm00001d038200_P002	Maize	plastid	19.1	20.87
Zm00001d009786_P001	Maize	plastid	12.07	19.53
Zm00001d011867_P001	Maize	cytosol	10.27	15.57
Zm00001d007315_P001	Maize	cytosol	4.86	15.17

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:103650005	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	UniProt:A0A1D6MQK0
InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005968
GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344	GO:GO:0019538
GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	InterPro:IPR036188	ProteinID:ONM31290.1	ProteinID:ONM31291.1
PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	InterPro:Rab_escort
SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI000221D519	EnsemblPlantsGene:Zm00001d040408	EnsemblPlants:Zm00001d040408_P003	EnsemblPlants:Zm00001d040408_T003
SEG:seg	:	:	:	:	:

Description

Rab escort protein 1

Coordinates

chr3:+:41714129..41721654

Molecular Weight (calculated)

59660.7 Da

IEP (calculated)

4.550

GRAVY (calculated)

-0.041

Length

555 amino acids

Sequence
(BLAST)

001: MAEAAADSSN SAVDGGGSNV QNDYPTIDPT SFDVVLCGTG LPESVLAAAC AAVGKTVLHV DPSPFYGSLY SSIPLSSLTS FLSPEASPPT SSAAAAASDS
101: RTVVDLHRRS VYSDVETSGT VPEPARRFTV DMVGPRVLYC ADEAVDLLLR SGGSHHVEFK SVEGGSLLYW EGCLYPVPDS RQAIFKDTTL KLKEKNILFR
201: FFKLVQAHIA AASASSDETG QGDASTKIPE EDLDLPFVEF LKKQGLPPKM RAVVLYAIAM VDYDQDGADP CDKLTTTREG IQTIALYSSS IGRFANAEGA
301: FIYPMYGHAE LPQAFCRCAA VKGALYVLRM PVVALLMDEE KKHFLGARLA SGQDILCQQL IIDASYKIPT LDVPFDGSDS WKVVRGVCII SKSVKQGSSN
401: VLVIFPPKSL EEQQVAAVRL LQLSSNLAVC PPGMFISYLS TPCTDVSAGK QSIKKAIDTL FSPQASDGSE GHFETTNEST EDVKPTLIWS CLYVQEITQG
501: TSGSLLSCPM PDEYLDYRNV LGSTKKLFAS IYPDEEFLPK KSAPVYADDA SDSAE

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.