CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid, vacuole
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77774
CDY17729
CDY25963
CDY28925
CDY40561
CDY41053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	CDX77774	AT5G47520.1	21798944
AT3G06540.1	CDY17729	AT5G47520.1	21798944
AT3G06540.1	CDY25963	AT5G47520.1	21798944
AT3G06540.1	CDY28925	AT5G47520.1	21798944
AT3G06540.1	CDY40561	AT5G47520.1	21798944
AT3G06540.1	CDY41053	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24684	Canola	cytosol	91.62	90.81
AT3G06540.1	Thale cress	cytosol	76.65	76.38
CDY34947	Canola	cytosol, plastid, vacuole	71.84	73.54
Zm00001d004622_P001	Maize	cytosol	6.95	54.17
VIT_04s0044g00070.t01	Wine grape	peroxisome	52.94	53.42
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.77	52.78
KRH28917	Soybean	cytosol, peroxisome, plastid	51.69	52.63
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	51.16	51.9
CDY23584	Canola	cytosol, nucleus, peroxisome	13.9	50.98
PGSC0003DMT400003853	Potato	peroxisome	47.95	48.64
Solyc02g082730.2.1	Tomato	extracellular	47.77	48.55
Os01t0269100-01	Rice	plasma membrane	27.45	47.68
KRH05675	Soybean	extracellular, vacuole	16.04	45.23
KXG32246	Sorghum	cytosol, nucleus, peroxisome	44.03	44.19
GSMUA_Achr6P03390_001	Banana	peroxisome	38.68	44.11
Zm00001d040408_P003	Maize	peroxisome	43.32	43.78
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	43.32	43.32
TraesCS3A01G185700.1	Wheat	cytosol	42.96	43.04
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	42.96	43.04
Zm00001d008269_P001	Maize	peroxisome	42.6	42.91
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	42.42	42.5
Zm00001d009201_P001	Maize	cytosol	11.94	39.65
CDY56553	Canola	cytosol	19.25	24.27
CDY21587	Canola	cytosol	19.25	24.27
CDX81131	Canola	cytosol	19.25	24.27
CDY45775	Canola	cytosol	19.07	24.1
CDY17885	Canola	cytosol	19.07	24.1
CDY05962	Canola	cytosol	19.07	24.1
CDX98399	Canola	cytosol	19.07	24.1
CDX89038	Canola	cytosol	19.07	24.1
CDX79782	Canola	cytosol	19.07	24.1
CDX67817	Canola	cytosol	19.07	24.1
CDX71860	Canola	cytosol	17.47	23.96
CDY65664	Canola	cytosol	16.4	22.44
CDX69899	Canola	cytosol	12.3	21.9
CDY44805	Canola	cytosol	18.72	16.69
CDY42416	Canola	endoplasmic reticulum, extracellular	2.32	10.92
CDY05966	Canola	cytosol	7.13	9.85
CDX71865	Canola	cytosol, mitochondrion	4.99	8.83

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	GO:A0A078EXF2	EnsemblPlants:CDY05274
ProteinID:CDY05274	ProteinID:CDY05274.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005968	GO:GO:0006464
GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0018344	GO:GO:0019538	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00120100001
InterPro:IPR036188	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23
InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0004EED3EF	SEG:seg	:

Description

BnaC05g45290D

Coordinates

chrLK031960:-:796808..799405

Molecular Weight (calculated)

60460.1 Da

IEP (calculated)

4.466

GRAVY (calculated)

-0.031

Length

561 amino acids

Sequence
(BLAST)

001: MSDLPPYPPL DPTTYDLIIV GTGVPSSILA AAAASSSGTS VLHLDPNPFY GSHSASLSLP DLTSFLHSNS NSPSPPPPPP PSDNPDFLSV DLATRSLYSS
101: VEIATFDSSI LDERHSRKLN VDLCGPRVLF CADESINLML RSGSNNYVEF KSVDASFVGD SSGELRSVPD SRGAIFKDKS LALAEKNQLM KFFKLVQAHL
201: AAEEAVRITE EDMESPFVEF LANMRLPPKI KSIILYGIAM VDYDQDNVEA CGGLLKTREG IARLALYITS IGRFSNALGA LIYPIYGQGE LPQAFCRRAA
301: VKGCIYVLRM PITALLLDKA SESIETGGYK GVRLATGQEI FSQKLILDPC ITLGSESMSS LTDQQKETLR VLVPKAISSE GKIARGICII RGSVKAGISN
401: ALVVYPPKSL FPEQLAAIRV LQLGSGLAVC PADMHVLYFS TVCDNDDQGK AALLSAMSTL VRPQVPENSE SESVVENDNV EAKPVVLWRA LYVQELVKGE
501: FGGSISSASS PDGNLNYNEL VESAVKLYEH VMGSEELFKE ETSPDNATEE ENDGGVEIEA M

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.