Factsheet for HORVU3Hr1G038200.3

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G027660.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	HORVU2Hr1G027660.2	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	92.87	93.04
TraesCS3A01G185700.1	Wheat	cytosol	92.69	92.86
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	91.98	92.14
Os01t0269100-01	Rice	plasma membrane	42.6	73.99
GSMUA_Achr6P03390_001	Banana	peroxisome	46.17	52.64
VIT_04s0044g00070.t01	Wine grape	peroxisome	45.45	45.86
CDY34947	Canola	cytosol, plastid, vacuole	44.03	45.07
AT3G06540.1	Thale cress	cytosol	44.56	44.41
PGSC0003DMT400003853	Potato	peroxisome	43.49	44.12
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	43.32	43.94
KRH28917	Soybean	cytosol, peroxisome, plastid	42.78	43.56
Solyc02g082730.2.1	Tomato	extracellular	42.78	43.48
CDY05274	Canola	plastid	43.32	43.32
CDY24684	Canola	cytosol	43.32	42.93
Bra029586.1-P	Field mustard	peroxisome	43.32	42.86
KRH05675	Soybean	extracellular, vacuole	12.66	35.68
HORVU4Hr1G059230.1	Barley	cytosol	3.92	30.99
HORVU1Hr1G064490.8	Barley	cytosol	17.83	22.37
HORVU1Hr1G064480.1	Barley	cytosol	16.22	20.4
HORVU7Hr1G075170.1	Barley	mitochondrion	3.92	20.0
HORVU4Hr1G059240.2	Barley	cytosol	18.36	19.77
HORVU5Hr1G009840.1	Barley	cytosol	18.0	18.5
HORVU2Hr1G104740.2	Barley	mitochondrion	3.03	18.09

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	UniProt:A0A287KT73	InterPro:FAD/NAD-bd_sf
InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968
GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344
GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	GO:GO:2000541	EnsemblPlantsGene:HORVU3Hr1G038200
EnsemblPlants:HORVU3Hr1G038200.3	InterPro:IPR036188	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787
PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI000B4656D3	SEG:seg

Description

No Description!

Coordinates

chrchr3H:+:219970838..219976670

Molecular Weight (calculated)

60935.0 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.153

Length

561 amino acids

Sequence
(BLAST)

001: MADASAGGSL DDYPTIDPTS FDVVLCGTGL PESILAAACA AAGKTVLHVD PNPFYGSFYS SMPLPSVPSF LSPDSSTPCP SSSTTASSPA TAAYTAVDLE
101: RRSLYSEVET SGTVPEQSRR FTVDLVGPRL LYCADEAVDL LLRSGGSHHV EFKSVEGGSL IYWDGALCPV PDSRQAIFMD STHRSKEKLN LRDNLKEKTL
201: LFRFFKLVQS HIAASSSADK DGEGEASGKI SEEDLDLPFI EFLKKQQLQP KIRAVVLYAI AMADYDQDAA DSCEKLLTTR DGIKTLALYS SSIGRFANAQ
301: GAFIYPMYGH GELPQAFCRF AAVKGALYVL RMPVTALLVD QVEKKRYIGT RLASGQDILC QQLILGPSYK IPSLDMSSGT SDSNLTRKVA RGVCIISSSI
401: KQASSNVLVV FPPKSLQEQQ ATAVRALQLS SNVAVCPPGM FMVYLSTPCT DAFTGKQYIN KAMEVLFSTQ ASDDSEGHLE TTSRNIEDTK PALIWSYVYV
501: QEITQGTSGT VLSCPMPDEN LDYRDILEST KQLFTDTYPN EEFLPRNAAP KYADDDSDLA E

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.