Factsheet for TraesCS3B01G215300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G153500.1
TraesCS2B01G178600.1
TraesCS2D01G158800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	TraesCS2A01G153500.1	AT5G47520.1	21798944
AT3G06540.1	TraesCS2B01G178600.1	AT5G47520.1	21798944
AT3G06540.1	TraesCS2D01G158800.1	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	96.25	96.25
TraesCS3A01G185700.1	Wheat	cytosol	95.71	95.71
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	92.14	91.98
Os01t0269100-01	Rice	plasma membrane	42.14	73.06
GSMUA_Achr6P03390_001	Banana	peroxisome	46.07	52.44
VIT_04s0044g00070.t01	Wine grape	peroxisome	45.0	45.32
CDY34947	Canola	cytosol, plastid, vacuole	43.04	43.98
KRH28917	Soybean	cytosol, peroxisome, plastid	43.21	43.92
Solyc02g082730.2.1	Tomato	extracellular	42.86	43.48
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	42.86	43.4
AT3G06540.1	Thale cress	cytosol	43.39	43.16
CDY05274	Canola	plastid	43.04	42.96
PGSC0003DMT400003853	Potato	peroxisome	42.32	42.86
Bra029586.1-P	Field mustard	peroxisome	42.68	42.15
CDY24684	Canola	cytosol	42.32	41.87
KRH05675	Soybean	extracellular, vacuole	12.32	34.67
TraesCS4B01G205900.1	Wheat	cytosol, golgi	18.93	23.71
TraesCS1B01G271700.1	Wheat	cytosol	18.04	22.7
TraesCS1B01G271800.2	Wheat	cytosol, golgi	18.04	22.65
TraesCS5B01G042400.1	Wheat	cytosol	17.86	22.47

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968	GO:GO:0006464	GO:GO:0006810
GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344	GO:GO:0019538	GO:GO:0030234
GO:GO:2000541	InterPro:IPR036188	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787
PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:TraesCS3B01G215300	EnsemblPlants:TraesCS3B01G215300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:256250043..256255005

Molecular Weight (calculated)

60839.0 Da

IEP (calculated)

4.547

GRAVY (calculated)

-0.150

Length

560 amino acids

Sequence
(BLAST)

001: MADASAGGGS LDEYPTIDPT SFDVVLCGTG LPESILAAAC AAAGKTVLHV DPDPFYGSFY SSIPLPSVPS FLSADSSTPC PSSPTTTSSA TAEYTAVDLE
101: RRSLYSEVET SGTVPEPSRR FTVDLVGPRV LYCADEAVDL LLRSGGSHHV EFKSVEGGSL IYWDGALCPV PDSRQTIFMD STHRSKEKLN LRDNLKEKTL
201: LFRFFKLVQS HIAASSSGGK DGEGQASGKI SEEDLDLPFI EFLKKQQLQP KIRAVVLYAI AMADYDQDAA DTCEKLLTTR DGIKTLALYS SSIGRFANAQ
301: GAFIYPMYGH GELPQAFCRF AAVKGALYVL RMPVTALLVD EEKKRYIGTR LASGQDILCQ QLILGPSYKI PSLDMPSDAS DSNLTRKVAR GVCIISSSIK
401: EASSNVLVVF PPKSLQEQQA TAVRALQLSS NVAVCPPGMF MVYLSTPCTD AFTGKQYINK AMEVLFSTQA SDDSEGHLET TSKNIEDRKP VLIWSCVYVQ
501: EITQGTSGAV LSCPMPDENL DYRDILESTK QLFTDIYPDE EFLPRNATPK YADDDSDLAE

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.