Factsheet for Os01t0269100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0634200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	Os07t0634200-01	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	74.61	43.04
TraesCS3A01G185700.1	Wheat	cytosol	74.3	42.86
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	73.99	42.6
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	73.06	42.14
KRH05675	Soybean	extracellular, vacuole	23.53	38.19
VIT_04s0044g00070.t01	Wine grape	peroxisome	48.3	28.06
CDY05274	Canola	plastid	47.68	27.45
CDY24684	Canola	cytosol	47.99	27.39
CDY34947	Canola	cytosol, plastid, vacuole	46.44	27.37
GSMUA_Achr6P03390_001	Banana	peroxisome	41.49	27.24
AT3G06540.1	Thale cress	cytosol	47.37	27.18
Bra029586.1-P	Field mustard	peroxisome	47.68	27.16
Solyc02g082730.2.1	Tomato	extracellular	46.13	26.99
PGSC0003DMT400003853	Potato	peroxisome	45.82	26.76
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	44.58	26.04
KRH28917	Soybean	cytosol, peroxisome, plastid	44.27	25.95
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	22.91	16.63
Os05t0304400-01	Rice	plasma membrane	22.91	16.63
Os07t0271000-01	Rice	plasma membrane	21.98	15.92
Os03t0277000-01	Rice	plasma membrane	21.67	15.66

Protein Annotations

MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	ProteinID:BAF04611.1	ProteinID:BAS71490.1	InterPro:FAD/NAD-bd_sf
InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0017137	GO:GO:0019538	GO:GO:0030234	GO:GO:0050790	GO:GO:2000541
InterPro:IPR036188	EnsemblPlantsGene:Os01g0269100	EnsemblPlants:Os01t0269100-01	PFAM:PF00996	PRINTS:PR00891	PANTHER:PTHR11787
PANTHER:PTHR11787:SF23	UniProt:Q0JNR7	SUPFAM:SSF51905	UniParc:UPI0000DD8A7E	SEG:seg	:

Description

Similar to Rab proteins geranylgeranyltransferase component A 2 (Rab escort protein 2) (REP-2) (Choroideraemia-like protein). (Os01t0269100-01)

Coordinates

chr1:-:9273876..9279031

Molecular Weight (calculated)

34284.4 Da

IEP (calculated)

4.722

GRAVY (calculated)

-0.046

Length

323 amino acids

Sequence
(BLAST)

001: MADAPATGGG FPAQDYPTID PTSFDVVLCG TGLPESVLAA ACAAAGKTVL HVDPNPFYGS LFSSLPLPSL PSFLSPSPSD DPAPSPSPSS AAAVDLRRRS
101: PYSEVETSGA VPEPSRRFTA DLVGPRLLYC ADEAVDLLLR SGGSHHVEFK SVEGGTLLYW DGDLYPVPDS RQAIFKDTTL QLREKNLLFR FFKLVQAHIA
201: ASAAGAAAAG EGEASGRLPD EDLDLPFVEF LKRQNLSPKM RAVVLYAIAM ADYDQDGVES CERLLTTREG VKTIALYSSS IGRFANAEGA FIYPMYGHGE
301: LPQAFCRCAA VKGIANASHS TSC

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.