Factsheet for Solyc02g082730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 1
peroxisome 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g054150.2.1
Solyc11g012460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	Solyc05g054150.2.1	AT5G47520.1	21798944
AT3G06540.1	Solyc11g012460.1.1	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003853	Potato	peroxisome	87.68	87.52
VIT_04s0044g00070.t01	Wine grape	peroxisome	57.07	56.65
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	54.35	54.25
KRH28917	Soybean	cytosol, peroxisome, plastid	53.62	53.72
Zm00001d004622_P001	Maize	cytosol	6.88	52.78
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.7	51.39
AT3G06540.1	Thale cress	cytosol	50.18	49.2
KRH05675	Soybean	extracellular, vacuole	17.57	48.74
CDY24684	Canola	cytosol	49.09	47.88
CDY05274	Canola	plastid	48.55	47.77
CDY34947	Canola	cytosol, plastid, vacuole	46.92	47.26
Bra029586.1-P	Field mustard	peroxisome	48.01	46.74
Os01t0269100-01	Rice	plasma membrane	26.99	46.13
TraesCS3A01G185700.1	Wheat	cytosol	43.84	43.21
GSMUA_Achr6P03390_001	Banana	peroxisome	38.41	43.09
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	43.48	42.86
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	43.48	42.78
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	43.3	42.68
KXG32246	Sorghum	cytosol, nucleus, peroxisome	42.75	42.22
Zm00001d008269_P001	Maize	peroxisome	42.03	41.65
Zm00001d040408_P003	Maize	peroxisome	41.67	41.44
Zm00001d009201_P001	Maize	cytosol	11.23	36.69
Solyc12g017570.1.1	Tomato	plastid	20.65	25.68
Solyc08g015860.2.1	Tomato	extracellular	20.11	25.0
Solyc01g105810.2.1	Tomato	cytosol, unclear	19.93	24.72

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005968	GO:GO:0006464
GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344	GO:GO:0019538
GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	GO:GO:2000541	InterPro:IPR036188	UniProt:K4BAE3
PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	InterPro:Rab_escort
SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:Solyc02g082730.2	EnsemblPlants:Solyc02g082730.2.1	UniParc:UPI00027680FA	SEG:seg

Description

Rab escort protein 1 [Source:Projected from Arabidopsis thaliana (AT3G06540) UniProtKB/Swiss-Prot;Acc:Q8LLD4]

Coordinates

chr2:+:46377419..46384215

Molecular Weight (calculated)

60426.5 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.123

Length

552 amino acids

Sequence
(BLAST)

001: MDETASYPPI EPSNFDLIVV GTGLPEAILA SAASAAGKSV LHLDPNPSYG SHYASLPLQE FTSYIESHSS QSSSILTIPQ SDMDSGFTRV PLTTQPLYSS
101: VEITSYSSEP LAQSRKFNID LSGPRVLLCA DAMIDLILKS EVNQYMEFKS IDGSFISDGE GNLESVPDSR SAIFKDRKLS FTEKNQLMRF FKLVQGHLEA
201: ATAADGGESS ESKSISEQDL ESPFVEFLSK MGLSAKLKSI VLYAIAMAEY DQENADVCRS VLKTKDGIDR LALYHSSVGR FPNAPGAMIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPVN SLLMDKASGS YKGVCLASEQ ELFCHKLILA PSFVVQSPLP YSSPDAHDFG SRNTTEKLAR SICISKHSLK LDVANCLAFF
401: PPRSLFPEQV TAIHVLQLSS NVAVCPSGMF LTYLSAICED DVQGKNLLHT AIDVLFHVPV SGSPGNNNFV EDQSETGDAK PAVLWSVFYT QELAKFQDVR
501: DNIIRTPMPD GSPYYHDLLV ATEKIFRELY SGEEFFPKST SSEEGAAQEL ED

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.