Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24684 | Canola | cytosol | 77.62 | 77.21 |
| CDY05274 | Canola | plastid | 76.38 | 76.65 |
| CDY34947 | Canola | cytosol, plastid, vacuole | 74.6 | 76.64 |
| Bra029586.1-P | Field mustard | peroxisome | 76.38 | 75.84 |
| VIT_04s0044g00070.t01 | Wine grape | peroxisome | 54.88 | 55.58 |
| Zm00001d004622_P001 | Maize | cytosol | 6.93 | 54.17 |
| KRH28917 | Soybean | cytosol, peroxisome, plastid | 52.22 | 53.36 |
| KRH76543 | Soybean | cytosol, peroxisome, plasma membrane | 52.04 | 52.98 |
| Zm00001d050984_P001 | Maize | cytosol, mitochondrion, peroxisome | 6.75 | 52.78 |
| PGSC0003DMT400003853 | Potato | peroxisome | 50.09 | 50.99 |
| Solyc02g082730.2.1 | Tomato | extracellular | 49.2 | 50.18 |
| Os01t0269100-01 | Rice | plasma membrane | 27.18 | 47.37 |
| KRH05675 | Soybean | extracellular, vacuole | 16.52 | 46.73 |
| HORVU3Hr1G038200.3 | Barley | cytosol, nucleus, peroxisome | 44.41 | 44.56 |
| GSMUA_Achr6P03390_001 | Banana | peroxisome | 38.72 | 44.31 |
| TraesCS3A01G185700.1 | Wheat | cytosol | 43.34 | 43.57 |
| TraesCS3B01G215300.1 | Wheat | cytosol, nucleus, peroxisome | 43.16 | 43.39 |
| TraesCS3D01G189700.1 | Wheat | cytosol, nucleus, peroxisome | 43.16 | 43.39 |
| Zm00001d008269_P001 | Maize | peroxisome | 42.63 | 43.09 |
| Zm00001d040408_P003 | Maize | peroxisome | 42.45 | 43.06 |
| KXG32246 | Sorghum | cytosol, nucleus, peroxisome | 42.45 | 42.75 |
| Zm00001d009201_P001 | Maize | cytosol | 11.37 | 37.87 |
| AT5G09550.1 | Thale cress | cytosol | 19.36 | 24.49 |
| AT2G44100.1 | Thale cress | cytosol | 19.01 | 24.04 |
| AT3G59920.1 | Thale cress | cytosol | 18.65 | 23.65 |
Protein Annotations
| Gene3D:1.10.405.10 | MapMan:22.8.4.1.3 | Gene3D:3.30.519.10 | Gene3D:3.50.50.60 | EntrezGene:819832 | ProteinID:AAG51329.1 |
| ProteinID:AEE74410.1 | EMBL:AF409086 | ArrayExpress:AT3G06540 | EnsemblPlantsGene:AT3G06540 | RefSeq:AT3G06540 | TAIR:AT3G06540 |
| RefSeq:AT3G06540-TAIR-G | EnsemblPlants:AT3G06540.1 | TAIR:AT3G06540.1 | EMBL:AY094486 | Unigene:At.40504 | EMBL:BT000837 |
| InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor | GO:GO:0003674 | GO:GO:0005092 | GO:GO:0005096 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005968 | GO:GO:0006464 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007264 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0017137 |
| GO:GO:0018344 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0043547 | GO:GO:0050790 | GO:GO:2000541 |
| InterPro:IPR036188 | InterPro:Mrs6 | RefSeq:NP_187306.2 | PFAM:PF00996 | PIRSF:PIRSF016550 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00891 |
| PRINTS:PR00894 | PANTHER:PTHR11787 | PANTHER:PTHR11787:SF23 | UniProt:Q8LLD4 | Symbol:REP | InterPro:Rab_escort |
| SUPFAM:SSF51905 | SUPFAM:SSF54373 | UniParc:UPI000016335C | SEG:seg | : | : |
Description
REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
Coordinates
chr3:-:2034913..2037791
Molecular Weight (calculated)
61514.4 Da
IEP (calculated)
4.510
GRAVY (calculated)
-0.099
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.