Factsheet for TraesCS1B01G271800.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G261000.1	Wheat	cytosol	98.21	98.21
Os05t0304400-01	Rice	plasma membrane	93.05	93.26
TraesCS1B01G271700.1	Wheat	cytosol	92.6	92.81
KXG22017	Sorghum	cytosol	92.6	92.81
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	92.38	92.58
HORVU1Hr1G064480.1	Barley	cytosol	91.48	91.48
Zm00001d010255_P001	Maize	cytosol, extracellular	91.93	90.31
GSMUA_Achr7P23620_001	Banana	cytosol	87.89	88.69
Solyc12g017570.1.1	Tomato	plastid	86.1	86.49
GSMUA_Achr6P18380_001	Banana	cytosol	86.55	86.35
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	85.87	86.26
KRH59137	Soybean	endoplasmic reticulum	85.65	86.04
AT2G44100.1	Thale cress	cytosol	84.75	84.94
CDX98399	Canola	cytosol	84.53	84.91
PGSC0003DMT400035649	Potato	cytosol	84.53	84.91
CDX67817	Canola	cytosol	84.53	84.91
CDX79782	Canola	cytosol	84.3	84.68
Bra003395.1-P	Field mustard	cytosol	84.3	84.68
Solyc08g015860.2.1	Tomato	extracellular	84.3	84.68
Bra004805.1-P	Field mustard	cytosol	84.3	84.68
CDY17885	Canola	cytosol	84.3	84.68
TraesCS1D01G261000.1	Wheat	golgi	98.65	84.29
CDY45775	Canola	cytosol	83.86	84.23
VIT_05s0094g01550.t01	Wine grape	cytosol	83.86	84.23
Bra014523.1-P	Field mustard	cytosol	83.63	84.01
CDX89038	Canola	cytosol	83.63	84.01
AT3G59920.1	Thale cress	cytosol	83.63	84.01
Bra007493.1-P	Field mustard	cytosol	82.96	83.15
TraesCS5B01G042400.1	Wheat	cytosol	82.51	82.7
CDY05962	Canola	cytosol	82.29	82.66
CDX71860	Canola	cytosol	74.22	80.93
TraesCS4B01G205900.1	Wheat	cytosol, golgi	80.49	80.31
GSMUA_Achr10P...	Banana	cytosol	79.6	79.95
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	22.65	18.04

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:TraesCS1B01G271800	EnsemblPlants:TraesCS1B01G271800.2	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:477399768..477406029

Molecular Weight (calculated)

49703.5 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.265

Length

446 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GDSTSLNLNQ LWKKFRGEDK PPAHLGSSKD YNVDMVPKFM MANGTLVRTL IHTNVTKYLS
101: FKAVDGSFVF SKGKIHKVPA TDMEALKSPL MGLFEKRRAR NFFIYVQNYV EADPKTHQGL DLTTLTTKEL IAKHGLSDDT VDFIGHALAL HRDDRHLDEP
201: ALDTVKRMKL YSESLARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LSKPECKVEF NMEGKACGVT SEGETAKCKK VVCDPSYLTN KVRKIGKVAR
301: AIAIMSHPIP NTNESHSVQI ILPQKQLGRK SDMYVFCCSY THNVAPKGKF IAFVSAEAES DNIQSELKPG IDLLGPVDEL FFDMYDRYEP VNEPSLDNCF
401: ISTSYDATTH FETTVTDVLN MYTMITGKTI DLSVDLSAAS AAEEEY

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.