Factsheet for Bra004805.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79782	Canola	cytosol	100.0	100.0
CDY17885	Canola	cytosol	99.77	99.77
AT2G44100.1	Thale cress	cytosol	96.17	95.96
Bra014523.1-P	Field mustard	cytosol	92.12	92.12
Bra003395.1-P	Field mustard	cytosol	91.89	91.89
Bra007493.1-P	Field mustard	cytosol	90.54	90.34
KRH59137	Soybean	endoplasmic reticulum	86.26	86.26
Os05t0304400-01	Rice	plasma membrane	86.26	86.07
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	86.04	86.04
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	86.04	85.84
HORVU1Hr1G064490.8	Barley	cytosol	86.04	85.46
Solyc12g017570.1.1	Tomato	plastid	85.36	85.36
TraesCS1D01G260900.1	Wheat	cytosol, golgi	85.14	84.94
TraesCS1B01G271700.1	Wheat	cytosol	85.14	84.94
TraesCS1A01G260900.1	Wheat	cytosol	85.14	84.94
GSMUA_Achr7P23620_001	Banana	cytosol	84.46	84.84
KXG22017	Sorghum	cytosol	84.91	84.72
VIT_05s0094g01550.t01	Wine grape	cytosol	84.68	84.68
EES18242	Sorghum	cytosol	84.68	84.49
TraesCS1B01G271800.2	Wheat	cytosol, golgi	84.68	84.3
TraesCS1A01G261000.1	Wheat	cytosol	84.68	84.3
PGSC0003DMT400035649	Potato	cytosol	83.33	83.33
Solyc08g015860.2.1	Tomato	extracellular	82.66	82.66
Zm00001d010255_P001	Maize	cytosol, extracellular	84.46	82.6
GSMUA_Achr6P18380_001	Banana	cytosol	83.11	82.55
Zm00001d007315_P001	Maize	cytosol	32.43	80.9
EER98346	Sorghum	cytosol	80.86	80.49
Os07t0271000-01	Rice	plasma membrane	80.41	80.04
TraesCS5B01G042400.1	Wheat	cytosol	80.18	80.0
Zm00001d010251_P003	Maize	cytosol	84.23	79.91
TraesCS5A01G041100.1	Wheat	cytosol	79.95	79.78
TraesCS5D01G048100.1	Wheat	cytosol	79.73	79.55
HORVU1Hr1G064480.1	Barley	cytosol	78.6	78.25
Bra006026.1-P	Field mustard	cytosol	75.9	76.77
Bra009390.1-P	Field mustard	cytosol	76.8	76.63
GSMUA_Achr10P...	Banana	cytosol	76.13	76.13
Zm00001d005498_P001	Maize	cytosol	81.76	73.48
Zm00001d038200_P002	Maize	plastid	83.33	72.83
TraesCS1D01G261000.1	Wheat	golgi	84.91	72.22
HORVU5Hr1G009840.1	Barley	cytosol	80.41	65.38
Zm00001d009786_P001	Maize	plastid	46.4	60.06
Zm00001d011867_P001	Maize	cytosol	46.62	56.56
Bra028630.1-P	Field mustard	cytosol	75.68	54.81
Zm00001d016318_P002	Maize	cytosol	34.01	53.36
HORVU2Hr1G104740.2	Barley	mitochondrion	11.26	53.19
HORVU7Hr1G075170.1	Barley	mitochondrion	12.61	50.91
Bra007490.1-P	Field mustard	cytosol	31.98	34.98
Bra029586.1-P	Field mustard	peroxisome	25.45	19.93

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EnsemblPlantsGene:Bra004805	EnsemblPlants:Bra004805.1
EnsemblPlants:Bra004805.1-P	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	UniProt:M4CKS0	PFAM:PF00996	PRINTS:PR00891
PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI	SUPFAM:SSF51905	UniParc:UPI00015D7BE0

Description

AT2G44100 (E=2e-252) ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor

Coordinates

chrA05:+:1898162..1900945

Molecular Weight (calculated)

49613.4 Da

IEP (calculated)

5.954

GRAVY (calculated)

-0.286

Length

444 amino acids

Sequence
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGIKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEDK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPVEALKSSL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGV DLKRVTTKEL IAKFGLDENT IDFIGHAVAL HSNDSHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVMGVT SEGETAKCKK VVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG IDLLGQVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEE

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.