Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G523400.1 | Wheat | nucleus | 72.47 | 85.25 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 72.13 | 84.84 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 71.08 | 83.61 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 72.82 | 83.27 |
| Zm00001d026425_P003 | Maize | cytosol | 70.38 | 82.79 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 70.38 | 82.79 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 69.34 | 79.92 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 52.61 | 62.4 |
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 47.39 | 55.28 |
| PGSC0003DMT400065786 | Potato | cytosol, nucleus, plastid | 45.99 | 53.88 |
| CDY49093 | Canola | cytosol | 45.3 | 53.06 |
| CDY62016 | Canola | nucleus | 43.21 | 52.99 |
| Bra019660.1-P | Field mustard | cytosol | 44.95 | 52.87 |
| CDX96860 | Canola | nucleus | 44.6 | 52.46 |
| CDX84035 | Canola | nucleus | 44.6 | 52.46 |
| AT1G14340.1 | Thale cress | nucleus | 44.6 | 52.46 |
| Bra016705.1-P | Field mustard | nucleus | 44.6 | 52.46 |
| Solyc02g067390.2.1 | Tomato | cytosol | 43.21 | 48.63 |
| PGSC0003DMT400017749 | Potato | cytosol | 43.21 | 48.63 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 42.51 | 47.84 |
| KRH69305 | Soybean | nucleus | 48.43 | 47.77 |
| KRH40110 | Soybean | cytosol | 42.51 | 47.29 |
| Solyc05g007200.2.1 | Tomato | mitochondrion | 47.39 | 44.59 |
| AT3G01210.1 | Thale cress | cytosol | 37.63 | 43.37 |
| CDX74287 | Canola | cytosol | 36.93 | 42.06 |
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 36.93 | 42.06 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 36.24 | 41.27 |
| Os06t0112400-01 | Rice | plasma membrane | 31.36 | 34.48 |
| Os03t0748900-01 | Rice | cytosol | 31.71 | 32.73 |
| Os03t0713600-01 | Rice | cytosol | 31.36 | 31.69 |
| Os11t0549537-00 | Rice | mitochondrion, plastid | 25.09 | 29.75 |
| Os04t0594400-01 | Rice | plasma membrane | 29.62 | 27.07 |
| Os04t0624800-01 | Rice | nucleus | 30.31 | 23.14 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A0P0WFG4 | ProteinID:BAS91264.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os04g0641400 |
| EnsemblPlants:Os04t0641400-02 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0003938F23 | InterPro:Vip1-like_RRM_plant | SEG:seg |
Description
Similar to H0423H10.3 protein. (Os04t0641400-01);Similar to H0423H10.3 protein. (Os04t0641400-02);Similar to H0423H10.3 protein. (Os04t0641400-03)
Coordinates
chr4:-:32634135..32637813
Molecular Weight (calculated)
31199.5 Da
IEP (calculated)
6.402
GRAVY (calculated)
-0.242
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: VRWCGWVAFK PSPRVVAAEQ EGEVGGKPRR IQGRGIMSGT GYTVEVTNLS SRASESDLHE FFSFSGAIEH IELIRSGEYG STAYVTFKEP YSLETAVLLS
101: GATIVDQPVC IARWGQPNEP YNFWDTPNWY TEEEIEYRTY QTCQFNSTPQ EALTIAQDVV KTMLARGYVL SKDALARARA FDESHQVTAT AAAKAAELSK
201: RIGLTDRVSG LTDRVSAGVG AIRSVDETYH VSETTKTVAT ATGRTAVKVV NGIMTSSYFS AGAMMLSDAL HRAAQAAADL AAHGRHN
101: GATIVDQPVC IARWGQPNEP YNFWDTPNWY TEEEIEYRTY QTCQFNSTPQ EALTIAQDVV KTMLARGYVL SKDALARARA FDESHQVTAT AAAKAAELSK
201: RIGLTDRVSG LTDRVSAGVG AIRSVDETYH VSETTKTVAT ATGRTAVKVV NGIMTSSYFS AGAMMLSDAL HRAAQAAADL AAHGRHN
001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.