Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os06t0107000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | Os06t0107000-01 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 76.03 | 80.7 |
| Zm00001d005283_P001 | Maize | cytosol | 76.03 | 80.7 |
| KXG35179 | Sorghum | cytosol | 72.73 | 77.88 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 73.55 | 74.17 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 72.73 | 73.33 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 76.03 | 63.45 |
| PGSC0003DMT400067632 | Potato | cytosol | 41.32 | 54.95 |
| AT4G31830.1 | Thale cress | cytosol | 43.8 | 53.0 |
| Solyc08g006800.1.1 | Tomato | cytosol | 43.8 | 52.48 |
| CDX75199 | Canola | cytosol | 42.98 | 52.0 |
| CDX68792 | Canola | cytosol | 42.98 | 52.0 |
| CDY23312 | Canola | cytosol | 42.98 | 52.0 |
| CDY39881 | Canola | cytosol | 42.98 | 52.0 |
| Bra011302.1-P | Field mustard | cytosol | 42.98 | 52.0 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 51.24 | 51.24 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 47.11 | 50.89 |
| KRH15642 | Soybean | cytosol | 30.58 | 45.12 |
| Bra010218.1-P | Field mustard | cytosol | 42.15 | 41.13 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 33.06 | 39.22 |
| Bra000726.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 23.14 | 37.33 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 23.14 | 37.33 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 23.14 | 37.33 |
| KRH72311 | Soybean | endoplasmic reticulum, plastid, vacuole | 22.31 | 36.0 |
| CDY68621 | Canola | mitochondrion | 22.31 | 36.0 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 22.31 | 36.0 |
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 22.31 | 36.0 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 22.31 | 36.0 |
| Bra035268.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 22.31 | 36.0 |
| Bra033165.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 22.31 | 36.0 |
| CDX94242 | Canola | cytosol | 21.49 | 34.67 |
| PGSC0003DMT400028927 | Potato | plastid | 23.14 | 21.88 |
Protein Annotations
| EMBL:AK107885 | EnsemblPlants:Os09t0127700-01 | EnsemblPlantsGene:Os09g0127700 | EntrezGene:4346439 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | ProteinID:BAD22375.1 | ProteinID:BAF24525.1 | ProteinID:BAT06914.1 |
| ProteinID:EAZ43815.1 | RefSeq:XP_015611330.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0000377E63 | UniProt:Q6K3G5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved hypothetical protein. (Os09t0127700-01)
Coordinates
chr9:-:2123405..2124075
Molecular Weight (calculated)
12548.0 Da
IEP (calculated)
10.224
GRAVY (calculated)
-0.484
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSGTEEWR RNTDTHKMSA EEVRAAGVEA SMRPPGRGHG PGEVLHQRGR MPYGPGTMAL AGLGIFGVLG YLVLYHKARP GTPATEVAKV AVGHGDPVAG
101: RDAHKTPDDA AAAAAAARQG K
101: RDAHKTPDDA AAAAAAARQG K
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.