CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH35244
KRH38387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31830.1	KRH08874	AT4G25660.1	21798944
AT4G31830.1	KRH35244	AT4G25660.1	21798944
AT4G31830.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05375	Soybean	cytosol, endoplasmic reticulum, mitochondrion	87.8	70.59
PGSC0003DMT400067632	Potato	cytosol	59.76	53.85
Bra011302.1-P	Field mustard	cytosol	60.98	50.0
CDX68792	Canola	cytosol	60.98	50.0
CDX75199	Canola	cytosol	60.98	50.0
CDY23312	Canola	cytosol	57.32	47.0
CDY39881	Canola	cytosol	57.32	47.0
AT4G31830.1	Thale cress	cytosol	54.88	45.0
Solyc08g006800.1.1	Tomato	cytosol	54.88	44.55
VIT_04s0008g06660.t01	Wine grape	cytosol	56.1	41.07
KRH72311	Soybean	endoplasmic reticulum, plastid, vacuole	36.59	40.0
Bra010218.1-P	Field mustard	cytosol	53.66	35.48
TraesCS5D01G168500.1	Wheat	cytosol	47.56	32.5
TraesCS5B01G160800.1	Wheat	cytosol	47.56	32.5
KXG35179	Sorghum	cytosol	42.68	30.97
Os09t0127700-01	Rice	cytosol, plastid	45.12	30.58
Zm00001d005283_P001	Maize	cytosol	41.46	29.82
Zm00001d005284_P001	Maize	cytosol, plasma membrane	41.46	29.82
HORVU5Hr1G050950.1	Barley	cytosol	47.56	26.9
TraesCS5A01G163500.1	Wheat	cytosol	37.8	25.62

Protein Annotations

EMBL:ACUP02008622	EnsemblPlants:KRH15642	EnsemblPlantsGene:GLYMA_14G101900	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33919	PANTHER:PTHR33919:SF1	ProteinID:KRH15642	ProteinID:KRH15642.1	TMHMM:TMhelix	UniParc:UPI000233BB26
UniProt:I1M988	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:10079123..10080100

Molecular Weight (calculated)

8745.5 Da

IEP (calculated)

9.943

GRAVY (calculated)

-0.385

Length

82 amino acids

Sequence
(BLAST)

1: MDPQKAQAEA SKRPPGHGAT EVLHQKKSLP FSFTTMTIAG LLITAAVGYS VLYVKKKPEA SAKDVTKVSV GVAKPEETHP EN

Best Arabidopsis Sequence Match ( AT4G31830.1 )
(BLAST)

1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK

Arabidopsis Description

At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.