Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d045580_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | Zm00001d045580_P001 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005283_P001 | Maize | cytosol | 100.0 | 100.0 |
| KXG35179 | Sorghum | cytosol | 81.58 | 82.3 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 80.7 | 76.67 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 80.7 | 76.67 |
| Os09t0127700-01 | Rice | cytosol, plastid | 80.7 | 76.03 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 82.46 | 64.83 |
| PGSC0003DMT400067632 | Potato | cytosol | 43.86 | 54.95 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 57.02 | 53.72 |
| Solyc08g006800.1.1 | Tomato | cytosol | 47.37 | 53.47 |
| Bra011302.1-P | Field mustard | cytosol | 45.61 | 52.0 |
| CDX68792 | Canola | cytosol | 45.61 | 52.0 |
| CDX75199 | Canola | cytosol | 45.61 | 52.0 |
| AT4G31830.1 | Thale cress | cytosol | 45.61 | 52.0 |
| CDY23312 | Canola | cytosol | 44.74 | 51.0 |
| CDY39881 | Canola | cytosol | 44.74 | 51.0 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 48.25 | 49.11 |
| KRH15642 | Soybean | cytosol | 29.82 | 41.46 |
| Bra010218.1-P | Field mustard | cytosol | 43.86 | 40.32 |
| CDY68621 | Canola | mitochondrion | 26.32 | 40.0 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 26.32 | 40.0 |
| Bra035268.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 26.32 | 40.0 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.44 | 38.67 |
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.44 | 38.67 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 25.44 | 38.67 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 25.44 | 38.67 |
| Bra033165.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.44 | 38.67 |
| Bra000726.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 25.44 | 38.67 |
| KRH72311 | Soybean | endoplasmic reticulum, plastid, vacuole | 24.56 | 37.33 |
| CDX94242 | Canola | cytosol | 24.56 | 37.33 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 33.33 | 37.25 |
| PGSC0003DMT400028927 | Potato | plastid | 23.68 | 21.09 |
Protein Annotations
| EMBL:EU974093 | EnsemblPlants:Zm00001d005284_P001 | EnsemblPlants:Zm00001d005284_T001 | EnsemblPlantsGene:Zm00001d005284 | EntrezGene:100278520 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | ProteinID:ONM20759.1 | ProteinID:ONM20760.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000182F2C1 | UniProt:B6UA28 | MapMan:35.2 | : |
Description
F8M12.18 protein
Coordinates
chr2:-:167666783..167667127
Molecular Weight (calculated)
12191.5 Da
IEP (calculated)
10.444
GRAVY (calculated)
-0.711
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSGTEEWR RNADTHKMSA EEVRAAGVEE SMRPPGRGPG EVLHQRGRRP LPYGPGTMAL VGFGIVGVVG YLVLYQKARS GTPATEVAKV AVGHGDPAAG
101: RDPEKRREGS REAK
101: RDPEKRREGS REAK
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.