Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 97.33 | 97.33 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 97.33 | 97.33 |
| Bra033165.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 97.33 | 97.33 |
| CDY68621 | Canola | mitochondrion | 93.33 | 93.33 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 90.67 | 90.67 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 90.67 | 90.67 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 89.33 | 89.33 |
| KRH72311 | Soybean | endoplasmic reticulum, plastid, vacuole | 54.67 | 54.67 |
| CDX68792 | Canola | cytosol | 44.0 | 33.0 |
| CDX75199 | Canola | cytosol | 44.0 | 33.0 |
| CDY23312 | Canola | cytosol | 42.67 | 32.0 |
| CDY39881 | Canola | cytosol | 42.67 | 32.0 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 42.67 | 28.57 |
| PGSC0003DMT400028927 | Potato | plastid | 46.67 | 27.34 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 37.33 | 24.56 |
| Zm00001d005283_P001 | Maize | cytosol | 37.33 | 24.56 |
| KXG35179 | Sorghum | cytosol | 36.0 | 23.89 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 37.33 | 23.33 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 37.33 | 23.33 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 36.0 | 22.31 |
| Os09t0127700-01 | Rice | cytosol, plastid | 34.67 | 21.49 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 37.33 | 19.31 |
Protein Annotations
| EnsemblPlants:CDX94242 | EnsemblPlantsGene:GSBRNA2T00157217001 | GO:A0A078DZ87 | PANTHER:PTHR33919 | PANTHER:PTHR33919:SF4 | ProteinID:CDX94242 |
| ProteinID:CDX94242.1 | TMHMM:TMhelix | UniParc:UPI0004EB71B8 | MapMan:35.2 | : | : |
Description
BnaC02g29020D
Coordinates
chrLK031880:-:309661..309888
Molecular Weight (calculated)
7801.5 Da
IEP (calculated)
10.175
GRAVY (calculated)
-0.109
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGPEQAAKQ SSEVLCQRRS LGMCPVRAAA VGFVVIGGLG YMVLYSKKKP EASAGDVAKV MSGVSGTTEN TRPRN
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.