Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G019000.1 | |
| TraesCS7D01G016100.1 | |
| TraesCSU01G065800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | TraesCS7A01G019000.1 | AT4G25660.1 | 21798944 |
| AT4G31830.1 | TraesCS7D01G016100.1 | AT4G25660.1 | 21798944 |
| AT4G31830.1 | TraesCSU01G065800.1 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G168500.1 | Wheat | cytosol | 71.9 | 72.5 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 71.07 | 71.67 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 70.25 | 58.62 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 53.72 | 57.02 |
| Zm00001d005283_P001 | Maize | cytosol | 53.72 | 57.02 |
| KXG35179 | Sorghum | cytosol | 52.07 | 55.75 |
| Os09t0127700-01 | Rice | cytosol, plastid | 51.24 | 51.24 |
| Bra000726.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 23.97 | 38.67 |
| CDY68621 | Canola | mitochondrion | 23.97 | 38.67 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 23.97 | 38.67 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 23.97 | 38.67 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 23.97 | 38.67 |
| Bra035268.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 23.97 | 38.67 |
| KRH15642 | Soybean | cytosol | 25.62 | 37.8 |
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 23.14 | 37.33 |
| Bra033165.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 23.14 | 37.33 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 23.14 | 37.33 |
| PGSC0003DMT400067632 | Potato | cytosol | 27.27 | 36.26 |
| AT4G31830.1 | Thale cress | cytosol | 29.75 | 36.0 |
| CDX94242 | Canola | cytosol | 22.31 | 36.0 |
| CDY39881 | Canola | cytosol | 29.75 | 36.0 |
| CDY23312 | Canola | cytosol | 29.75 | 36.0 |
| KRH72311 | Soybean | endoplasmic reticulum, plastid, vacuole | 21.49 | 34.67 |
| Solyc08g006800.1.1 | Tomato | cytosol | 28.93 | 34.65 |
| CDX68792 | Canola | cytosol | 28.1 | 34.0 |
| CDX75199 | Canola | cytosol | 28.1 | 34.0 |
| Bra011302.1-P | Field mustard | cytosol | 28.1 | 34.0 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 28.1 | 33.33 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 28.1 | 30.36 |
| Bra010218.1-P | Field mustard | cytosol | 30.58 | 29.84 |
| PGSC0003DMT400028927 | Potato | plastid | 20.66 | 19.53 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G163500.1 | EnsemblPlantsGene:TraesCS5A01G163500 | PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr5A:-:350515354..350515719
Molecular Weight (calculated)
12736.3 Da
IEP (calculated)
10.223
GRAVY (calculated)
-0.669
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSGTEEWR RNADTHKMSP EEVRAAGVEA SMRPPGRGGG AGEVLHQRGG RLPYGPGTMA LMGFGIVGAI GYLVLYQKAR PGTPATEVAK VAVGHGDPAV
101: GREVQKRQDE AQPPPPPREG K
101: GREVQKRQDE AQPPPPPREG K
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.