Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_16s0050g01050.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | VIT_16s0050g01050.t01 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067632 | Potato | cytosol | 55.36 | 68.13 |
| Solyc08g006800.1.1 | Tomato | cytosol | 59.82 | 66.34 |
| AT4G31830.1 | Thale cress | cytosol | 58.04 | 65.0 |
| Bra011302.1-P | Field mustard | cytosol | 57.14 | 64.0 |
| CDX68792 | Canola | cytosol | 57.14 | 64.0 |
| CDX75199 | Canola | cytosol | 57.14 | 64.0 |
| CDY23312 | Canola | cytosol | 55.36 | 62.0 |
| CDY39881 | Canola | cytosol | 55.36 | 62.0 |
| KRH15642 | Soybean | cytosol | 41.07 | 56.1 |
| KRH72311 | Soybean | endoplasmic reticulum, plastid, vacuole | 33.93 | 50.67 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 49.11 | 48.25 |
| Zm00001d005283_P001 | Maize | cytosol | 49.11 | 48.25 |
| Os09t0127700-01 | Rice | cytosol, plastid | 50.89 | 47.11 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 42.86 | 47.06 |
| KXG35179 | Sorghum | cytosol | 47.32 | 46.9 |
| Bra010218.1-P | Field mustard | cytosol | 51.79 | 46.77 |
| Bra000726.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 31.25 | 46.67 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 31.25 | 46.67 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 31.25 | 46.67 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 48.21 | 45.0 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 48.21 | 45.0 |
| CDY68621 | Canola | mitochondrion | 29.46 | 44.0 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 29.46 | 44.0 |
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 29.46 | 44.0 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 29.46 | 44.0 |
| Bra035268.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 29.46 | 44.0 |
| Bra033165.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 29.46 | 44.0 |
| CDX94242 | Canola | cytosol | 28.57 | 42.67 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 47.32 | 36.55 |
| PGSC0003DMT400028927 | Potato | plastid | 33.93 | 29.69 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 30.36 | 28.1 |
Protein Annotations
| EntrezGene:100254214 | wikigene:100254214 | MapMan:35.2 | ProteinID:CBI21144 | ProteinID:CBI21144.3 | UniProt:D7SV45 |
| EMBL:FN595231 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016310 | GO:GO:0016620 | GO:GO:0016740 | GO:GO:0016772 | GO:GO:0055114 | EntrezGene:LOC100254214 |
| wikigene:LOC100254214 | PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | TMHMM:TMhelix | UniParc:UPI0001BE1B59 | ArrayExpress:VIT_04s0008g06660 |
| EnsemblPlantsGene:VIT_04s0008g06660 | EnsemblPlants:VIT_04s0008g06660.t01 | RefSeq:XP_002285534 | RefSeq:XP_002285534.1 | : | : |
Description
No Description!
Coordinates
chr4:-:6654258..6654772
Molecular Weight (calculated)
12492.2 Da
IEP (calculated)
10.625
GRAVY (calculated)
-0.780
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKEEWRKM ADTHMMKDEE VKTKGVEASK RPPGHNPGEV LHQRRKLPYS PPTMAVAGFL IAATLGYFTL YAMKKPEATA KDVAKVATGT AEPQDTHPRK
101: FGRLGWAKNV RK
101: FGRLGWAKNV RK
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.