Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | KRH08874 | AT4G25660.1 | 21798944 |
| AT4G31830.1 | KRH35244 | AT4G25660.1 | 21798944 |
| AT4G31830.1 | KRH38387 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15642 | Soybean | cytosol | 70.59 | 87.8 |
| PGSC0003DMT400067632 | Potato | cytosol | 50.0 | 56.04 |
| Bra011302.1-P | Field mustard | cytosol | 51.96 | 53.0 |
| CDX68792 | Canola | cytosol | 51.96 | 53.0 |
| CDX75199 | Canola | cytosol | 51.96 | 53.0 |
| CDY23312 | Canola | cytosol | 49.02 | 50.0 |
| CDY39881 | Canola | cytosol | 49.02 | 50.0 |
| Solyc08g006800.1.1 | Tomato | cytosol | 49.02 | 49.51 |
| AT4G31830.1 | Thale cress | cytosol | 47.06 | 48.0 |
| KRH72311 | Soybean | endoplasmic reticulum, plastid, vacuole | 32.35 | 44.0 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 47.06 | 42.86 |
| Bra010218.1-P | Field mustard | cytosol | 46.08 | 37.9 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 41.18 | 35.0 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 41.18 | 35.0 |
| KXG35179 | Sorghum | cytosol | 37.25 | 33.63 |
| Zm00001d005283_P001 | Maize | cytosol | 37.25 | 33.33 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 37.25 | 33.33 |
| Os09t0127700-01 | Rice | cytosol, plastid | 39.22 | 33.06 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 41.18 | 28.97 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 33.33 | 28.1 |
Protein Annotations
| EMBL:ACUP02010732 | EnsemblPlants:KRH05375 | EnsemblPlantsGene:GLYMA_17G223300 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | ProteinID:KRH05375 | ProteinID:KRH05375.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0006ED8DA2 | UniProt:A0A0R0FSB9 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:37655550..37656130
Molecular Weight (calculated)
11235.4 Da
IEP (calculated)
9.790
GRAVY (calculated)
-0.689
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: FHIYREEEGK GSEGKEEFQK MDPQKAQAEA SKRPPGHGAT EVLHQRKSLP FNFTTMTIAG LVITAAVGYT VLYVKKKPEA SAKDVAKVTL GVANPEETHP
101: KR
101: KR
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.