Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g082060.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | Solyc02g082060.1.1 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067632 | Potato | cytosol | 85.15 | 94.51 |
| Bra011302.1-P | Field mustard | cytosol | 71.29 | 72.0 |
| CDX68792 | Canola | cytosol | 71.29 | 72.0 |
| CDX75199 | Canola | cytosol | 71.29 | 72.0 |
| CDY23312 | Canola | cytosol | 68.32 | 69.0 |
| CDY39881 | Canola | cytosol | 68.32 | 69.0 |
| AT4G31830.1 | Thale cress | cytosol | 67.33 | 68.0 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 66.34 | 59.82 |
| KRH15642 | Soybean | cytosol | 44.55 | 54.88 |
| Bra010218.1-P | Field mustard | cytosol | 64.36 | 52.42 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 49.51 | 49.02 |
| KXG35179 | Sorghum | cytosol | 53.47 | 47.79 |
| Zm00001d005283_P001 | Maize | cytosol | 53.47 | 47.37 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 53.47 | 47.37 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 54.46 | 45.83 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 54.46 | 45.83 |
| Os09t0127700-01 | Rice | cytosol, plastid | 52.48 | 43.8 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 52.48 | 36.55 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 34.65 | 28.93 |
Protein Annotations
| EnsemblPlants:Solyc08g006800.1.1 | EnsemblPlantsGene:Solyc08g006800.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33919 |
| PANTHER:PTHR33919:SF1 | TMHMM:TMhelix | UniParc:UPI000276C239 | UniProt:K4CIG8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr8:+:1352124..1353633
Molecular Weight (calculated)
10913.2 Da
IEP (calculated)
10.468
GRAVY (calculated)
-0.600
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGNNEEWRK MADTHKMSPE EVKKAGVESS RRPPGHNPGT ILHQRGRLPY SITTMTIVGL GIAGAIWYGT MYAMKKPEAS AVDVAKVATG VGGPKDTHPR
101: K
101: K
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.