Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011302.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX68792 | Canola | cytosol | 100.0 | 100.0 |
| CDY23312 | Canola | cytosol | 95.0 | 95.0 |
| CDY39881 | Canola | cytosol | 95.0 | 95.0 |
| AT4G31830.1 | Thale cress | cytosol | 94.0 | 94.0 |
| PGSC0003DMT400067632 | Potato | cytosol | 69.0 | 75.82 |
| Solyc08g006800.1.1 | Tomato | cytosol | 72.0 | 71.29 |
| KRH15642 | Soybean | cytosol | 50.0 | 60.98 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 64.0 | 57.14 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 53.0 | 51.96 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 36.0 | 48.0 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 36.0 | 48.0 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 52.0 | 45.61 |
| Zm00001d005283_P001 | Maize | cytosol | 52.0 | 45.61 |
| CDY68621 | Canola | mitochondrion | 34.0 | 45.33 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 34.0 | 45.33 |
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 34.0 | 45.33 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 34.0 | 45.33 |
| KXG35179 | Sorghum | cytosol | 51.0 | 45.13 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 53.0 | 44.17 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 53.0 | 44.17 |
| CDX94242 | Canola | cytosol | 33.0 | 44.0 |
| Os09t0127700-01 | Rice | cytosol, plastid | 52.0 | 42.98 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 51.0 | 35.17 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 34.0 | 28.1 |
Protein Annotations
| EnsemblPlants:CDX75199 | EnsemblPlantsGene:GSBRNA2T00121045001 | GO:A0A078CGF8 | PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | ProteinID:CDX75199 |
| ProteinID:CDX75199.1 | TMHMM:TMhelix | UniParc:UPI00025467FB | MapMan:35.2 | : | : |
Description
BnaA01g05030D
Coordinates
chrLK031804:-:57416..57718
Molecular Weight (calculated)
10592.6 Da
IEP (calculated)
10.320
GRAVY (calculated)
-0.640
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGENDWRKT ADTTKMSPEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMAIAGLA ISGAVMYTVM YAKKKPEASA TDVAKVATGT AKPEDTHPRK
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.