Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39881 | Canola | cytosol | 100.0 | 100.0 |
| AT4G31830.1 | Thale cress | cytosol | 97.0 | 97.0 |
| CDX68792 | Canola | cytosol | 95.0 | 95.0 |
| CDX75199 | Canola | cytosol | 95.0 | 95.0 |
| Bra010218.1-P | Field mustard | cytosol | 94.0 | 75.81 |
| PGSC0003DMT400067632 | Potato | cytosol | 64.0 | 70.33 |
| Solyc08g006800.1.1 | Tomato | cytosol | 69.0 | 68.32 |
| KRH15642 | Soybean | cytosol | 47.0 | 57.32 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 62.0 | 55.36 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 50.0 | 49.02 |
| CDX90786 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 35.0 | 46.67 |
| CDY05124 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 35.0 | 46.67 |
| KXG35179 | Sorghum | cytosol | 51.0 | 45.13 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 51.0 | 44.74 |
| Zm00001d005283_P001 | Maize | cytosol | 51.0 | 44.74 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 53.0 | 44.17 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 53.0 | 44.17 |
| CDY68621 | Canola | mitochondrion | 33.0 | 44.0 |
| CDY62265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 33.0 | 44.0 |
| CDY25265 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 33.0 | 44.0 |
| CDX86832 | Canola | cytosol, mitochondrion, plasma membrane, plastid | 33.0 | 44.0 |
| Os09t0127700-01 | Rice | cytosol, plastid | 52.0 | 42.98 |
| CDX94242 | Canola | cytosol | 32.0 | 42.67 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 51.0 | 35.17 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 36.0 | 29.75 |
Protein Annotations
| EnsemblPlants:CDY23312 | EnsemblPlantsGene:GSBRNA2T00021892001 | GO:A0A078HQG0 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33919 | PANTHER:PTHR33919:SF1 | ProteinID:CDY23312 | ProteinID:CDY23312.1 | ProteinID:CDY39881.1 | TMHMM:TMhelix |
| UniParc:UPI0004EE1D63 | UniProt:A0A078HQG0 | MapMan:35.2 | : | : | : |
Description
BnaA08g12340DBnaA08g12340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQG0]
Coordinates
chrLK032142:-:433058..433360
Molecular Weight (calculated)
10596.6 Da
IEP (calculated)
10.320
GRAVY (calculated)
-0.636
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGENDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YVKKKPEASA TDVAKAATGT AKPEDTHPRK
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.