Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018924 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G31830.1 | PGSC0003DMT400018924 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g006800.1.1 | Tomato | cytosol | 94.51 | 85.15 |
| Bra011302.1-P | Field mustard | cytosol | 75.82 | 69.0 |
| CDX68792 | Canola | cytosol | 75.82 | 69.0 |
| CDX75199 | Canola | cytosol | 75.82 | 69.0 |
| CDY23312 | Canola | cytosol | 70.33 | 64.0 |
| CDY39881 | Canola | cytosol | 70.33 | 64.0 |
| AT4G31830.1 | Thale cress | cytosol | 70.33 | 64.0 |
| KRH15642 | Soybean | cytosol | 53.85 | 59.76 |
| VIT_04s0008g06660.t01 | Wine grape | cytosol | 68.13 | 55.36 |
| KRH05375 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 56.04 | 50.0 |
| Bra010218.1-P | Field mustard | cytosol | 65.93 | 48.39 |
| Zm00001d005284_P001 | Maize | cytosol, plasma membrane | 54.95 | 43.86 |
| Zm00001d005283_P001 | Maize | cytosol | 54.95 | 43.86 |
| KXG35179 | Sorghum | cytosol | 52.75 | 42.48 |
| TraesCS5B01G160800.1 | Wheat | cytosol | 54.95 | 41.67 |
| TraesCS5D01G168500.1 | Wheat | cytosol | 54.95 | 41.67 |
| Os09t0127700-01 | Rice | cytosol, plastid | 54.95 | 41.32 |
| HORVU5Hr1G050950.1 | Barley | cytosol | 52.75 | 33.1 |
| TraesCS5A01G163500.1 | Wheat | cytosol | 36.26 | 27.27 |
| PGSC0003DMT400028927 | Potato | plastid | 36.26 | 25.78 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067632 | EnsemblPlantsGene:PGSC0003DMG400026298 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33919 |
| PANTHER:PTHR33919:SF1 | PGSC:PGSC0003DMG400026298 | TMHMM:TMhelix | UniParc:UPI000296F193 | UniProt:M1CHK8 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026298]
Coordinates
chr8:-:1776166..1777460
Molecular Weight (calculated)
9684.8 Da
IEP (calculated)
10.526
GRAVY (calculated)
-0.482
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MADTHKMSPE EVKKAGVESS RRPPGHNPGT VLHQRGRLPY SITTMTIAGL AITGAVWYGT MYAMKKPEAS AVDVAKVATG VGGPKDTHPR K
1: MAGEEDWRKT ADTTKMSSEG VKAAGVESSK RPPGSNPGGV LHQRRNLPYS YTTMALAGLA ISGAIMYTVM YAKKKPEATA TDVAKAATGT AKPEDTHPRK
Arabidopsis Description
At4g31830 [Source:UniProtKB/TrEMBL;Acc:Q9SZ50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.