Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74287 | Canola | cytosol | 99.21 | 99.21 |
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 98.81 | 98.81 |
| AT3G01210.1 | Thale cress | cytosol | 87.3 | 88.35 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 53.17 | 52.55 |
| KRH40110 | Soybean | cytosol | 53.57 | 52.33 |
| Solyc02g067390.2.1 | Tomato | cytosol | 50.4 | 49.8 |
| PGSC0003DMT400017749 | Potato | cytosol | 50.4 | 49.8 |
| CDY62016 | Canola | nucleus | 43.65 | 47.01 |
| CDY49093 | Canola | cytosol | 44.84 | 46.12 |
| CDX96860 | Canola | nucleus | 44.44 | 45.9 |
| CDX84035 | Canola | nucleus | 44.05 | 45.49 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 43.25 | 45.04 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 41.67 | 43.03 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 41.27 | 42.62 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 40.87 | 42.21 |
| Zm00001d026425_P003 | Maize | cytosol | 40.48 | 41.8 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 41.27 | 41.43 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 39.68 | 40.98 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 38.89 | 39.36 |
| Os04t0641400-02 | Rice | plastid | 41.27 | 36.24 |
| CDY01476 | Canola | cytosol | 17.86 | 31.47 |
| CDX78713 | Canola | cytosol | 31.75 | 30.65 |
| CDX70721 | Canola | cytosol | 31.35 | 30.27 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 9.13 | 30.26 |
| CDX69415 | Canola | cytosol | 30.95 | 30.0 |
| CDY38176 | Canola | cytosol | 29.37 | 28.14 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.37 | 27.82 |
| CDX85485 | Canola | plastid | 32.94 | 26.35 |
| CDY60787 | Canola | nucleus | 30.56 | 25.41 |
| CDX78795 | Canola | nucleus | 30.56 | 25.41 |
| CDY01477 | Canola | cytosol | 30.16 | 25.08 |
| CDX90453 | Canola | cytosol | 30.56 | 24.92 |
| CDY16974 | Canola | plastid | 31.35 | 24.84 |
| CDY01872 | Canola | cytosol, plastid | 27.38 | 24.3 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.35 | 23.72 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 30.56 | 22.99 |
| CDY01473 | Canola | nucleus | 15.87 | 20.2 |
| CDX90455 | Canola | cytosol | 16.67 | 20.19 |
| CDY38083 | Canola | nucleus | 32.54 | 19.57 |
Protein Annotations
| EnsemblPlants:CDX91958 | EnsemblPlantsGene:GSBRNA2T00153595001 | Gene3D:3.30.70.330 | GO:A0A078DXF8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44136 | PANTHER:PTHR44136:SF1 | PFAM:PF00076 | ProteinID:CDX91958 | ProteinID:CDX91958.1 | SEG:seg |
| SUPFAM:SSF54928 | UniParc:UPI0004EF24C0 | MapMan:35.1 | : | : | : |
Description
BnaC03g32600D
Coordinates
chrLK031870:-:992459..993621
Molecular Weight (calculated)
26547.3 Da
IEP (calculated)
5.254
GRAVY (calculated)
0.105
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPCGYVAEV TNLSPRATEK DVQSFFSHCG IVELVEITGC QGDDALTAYV TFRDAYALDM ALLLTGATIV DQTVWISMYG VYLHESNNLT REGDYTLTVT
101: QSHADAFASS PGEAVTIAQQ VVKTMISKGY VLSKDAIGKA KALDESQGFS SLVANKLAEI GRYTGLTQNI QSSMEVVRSA DDKYHFSDFT KSAVLVTGTA
201: AVAAATITGK VAASAATTVV NSRYFANGAL WFSDALGRAA KAAAHMGGGG SS
101: QSHADAFASS PGEAVTIAQQ VVKTMISKGY VLSKDAIGKA KALDESQGFS SLVANKLAEI GRYTGLTQNI QSSMEVVRSA DDKYHFSDFT KSAVLVTGTA
201: AVAAATITGK VAASAATTVV NSRYFANGAL WFSDALGRAA KAAAHMGGGG SS
001: MYPCGYVAQV TNLSPQATEK DVHRFFSHCG IVELVEITGC QGDALTAYVT FRDAYALDMA VLLSGATIVD QTVWISVYGV YLHESNNLRQ EEDYSVTVTR
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
101: SDAFASSPGE AITVAQQVVQ TMLAKGYVLS KDAIGKAKAL DESQRFSSLV ATKLAEISHY LGLTQNIQSS MELVRSADEK YHFSDFTKSA VLVTGTAAVA
201: AATITGKVAA AAATSVVNSR YFANGALWFS DALGRAAKAA AHIGGGGSN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAD0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.