CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039914.1-P	Field mustard	cytosol	96.99	98.1
CDY38176	Canola	cytosol	96.99	98.1
AT5G32450.1	Thale cress	cytosol	81.2	80.9
VIT_08s0032g00290.t01	Wine grape	cytosol	67.67	67.16
GSMUA_Achr4P10680_001	Banana	cytosol	65.79	66.04
Solyc10g076890.1.1	Tomato	cytosol	67.67	65.93
PGSC0003DMT400018578	Potato	cytosol	67.29	65.09
KRH06674	Soybean	cytosol	66.92	64.49
CDY60084	Canola	cytosol, nucleus, plastid	18.42	64.47
GSMUA_Achr8P04640_001	Banana	cytosol	63.16	63.16
EER93456	Sorghum	cytosol	65.41	63.04
KRG94865	Soybean	cytosol	57.14	61.54
TraesCS5B01G392900.1	Wheat	cytosol	62.78	61.4
Zm00001d013271_P003	Maize	cytosol	63.91	60.5
Os03t0748900-01	Rice	cytosol	63.16	60.43
TraesCS5A01G387800.1	Wheat	cytosol	61.65	60.29
TraesCS5D01G397700.2	Wheat	cytosol	62.03	59.57
HORVU5Hr1G095000.1	Barley	nucleus	62.03	44.72
CDY01476	Canola	cytosol	23.31	43.36
GSMUA_AchrUn_...	Banana	cytosol	24.81	40.99
CDX69415	Canola	cytosol	39.85	40.77
CDX70721	Canola	cytosol	39.1	39.85
CDX78713	Canola	cytosol	38.72	39.46
CDY49093	Canola	cytosol	34.59	37.55
CDX96860	Canola	nucleus	34.21	37.3
CDX84035	Canola	nucleus	33.46	36.48
CDY62016	Canola	nucleus	31.95	36.32
CDX78795	Canola	nucleus	41.35	36.3
CDY60787	Canola	nucleus	40.98	35.97
CDY01477	Canola	cytosol	40.23	35.31
CDX90453	Canola	cytosol	40.6	34.95
CDY01872	Canola	cytosol, plastid	35.71	33.45
CDY16974	Canola	plastid	39.85	33.33
CDX85485	Canola	plastid	39.47	33.33
CDY33486	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.23	32.13
CDX77703	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	40.23	31.94
CDX90455	Canola	cytosol	24.44	31.25
CDY01473	Canola	nucleus	22.18	29.8
CDX91958	Canola	cytosol, nucleus, plastid	27.82	29.37
CDX74287	Canola	cytosol	27.82	29.37
Zm00001d033453_P001	Maize	cytosol	36.84	29.17
CDY38083	Canola	nucleus	39.1	24.82

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:A0A078GID4	UniProt:A0A078GID4	EnsemblPlants:CDY25131	ProteinID:CDY25131
ProteinID:CDY25131.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00029014001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136
PANTHER:PTHR44136:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEF1C2
SEG:seg	:	:	:	:	:

Description

BnaC07g03760DBnaC07g03760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GID4]

Coordinates

chrLK032169:+:81356..83449

Molecular Weight (calculated)

28868.3 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.220

Length

266 amino acids

Sequence
(BLAST)

001: MQQQQQQTRS VRVENVSDLA TEREIHEFFS FSGDIDHIEI LKDASEQSIV AFVTFTEPKA LEIALLLSGA TIVDKIVTIT PAENYVPRRE IIQQVVENTI
101: PSTPTRQTAD GNGGRAYVSK AQDVMATVLA KGSALGQDAV NKAKAFDELH QLRANASAKV SYFDKRVRLS EKFNVGISVV NEKVKSVDQR LQVSDKTMAA
201: IFAAEKKLND TGSAVKSSRY VTAGAAWFSG AFSKVARAGQ LAGSKTKEKF NLAVSNIASK DTPIAV

Best Arabidopsis Sequence Match ( AT5G32450.1 )
(BLAST)

001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.