Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96860 | Canola | nucleus | 95.9 | 95.9 |
| CDY62016 | Canola | nucleus | 86.89 | 90.6 |
| CDY49093 | Canola | cytosol | 88.93 | 88.57 |
| AT1G14340.1 | Thale cress | nucleus | 84.02 | 84.02 |
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 63.52 | 63.01 |
| PGSC0003DMT400065786 | Potato | cytosol, nucleus, plastid | 59.84 | 59.59 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 57.38 | 57.85 |
| KRH69305 | Soybean | nucleus | 62.3 | 52.23 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 51.64 | 51.64 |
| Zm00001d026425_P003 | Maize | cytosol | 51.64 | 51.64 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 50.41 | 49.4 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 49.18 | 49.18 |
| TraesCS2B01G551100.1 | Wheat | nucleus | 49.18 | 49.18 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 49.18 | 49.18 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 49.59 | 48.21 |
| Solyc05g007200.2.1 | Tomato | mitochondrion | 59.84 | 47.87 |
| CDY01476 | Canola | cytosol | 26.23 | 44.76 |
| Os04t0641400-02 | Rice | plastid | 52.46 | 44.6 |
| CDX74287 | Canola | cytosol | 45.9 | 44.44 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 45.49 | 44.05 |
| CDX78713 | Canola | cytosol | 38.11 | 35.63 |
| CDX70721 | Canola | cytosol | 37.7 | 35.25 |
| CDX69415 | Canola | cytosol | 37.3 | 35.0 |
| CDY38176 | Canola | cytosol | 36.48 | 33.84 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 36.48 | 33.46 |
| CDY60787 | Canola | nucleus | 38.93 | 31.35 |
| CDX78795 | Canola | nucleus | 38.52 | 31.02 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 9.43 | 30.26 |
| CDY01477 | Canola | cytosol | 36.89 | 29.7 |
| CDY16974 | Canola | plastid | 38.11 | 29.25 |
| CDX85485 | Canola | plastid | 37.7 | 29.21 |
| CDX90453 | Canola | cytosol | 36.89 | 29.13 |
| CDY01872 | Canola | cytosol, plastid | 32.38 | 27.82 |
| CDY01473 | Canola | nucleus | 21.31 | 26.26 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 35.25 | 25.67 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 34.02 | 24.92 |
| CDX90455 | Canola | cytosol | 19.67 | 23.08 |
| CDY38083 | Canola | nucleus | 37.7 | 21.96 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078D4I0 | EnsemblPlants:CDX84035 | ProteinID:CDX84035 | ProteinID:CDX84035.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00139856001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF7 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE3C82 | InterPro:Vip1-like_RRM_plant | SEG:seg |
Description
BnaC08g16100D
Coordinates
chrLK031834:-:1868279..1869798
Molecular Weight (calculated)
26223.6 Da
IEP (calculated)
6.399
GRAVY (calculated)
-0.234
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQNGFGVE VTGLSPAVTE KDLIDFFSFS GAVEHIDIIR SGEQACTAYV MFKDSYSQET AVLLSGATIL EQRVCITRWG QHHEEFDFWN ATQRGFVDDT
101: NSHPHPQRGE FTAGEAVTKA QEVVKSMLAT GFVLGKDALA KAKGFDESHG VSAAAAARVS QLDQRIGLTD KIFTGVEAVR LTDQKYQLSD KARSAVSATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLRSR GPRQ
101: NSHPHPQRGE FTAGEAVTKA QEVVKSMLAT GFVLGKDALA KAKGFDESHG VSAAAAARVS QLDQRIGLTD KIFTGVEAVR LTDQKYQLSD KARSAVSATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLRSR GPRQ
001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.