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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • nucleus 2
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX83579
CDX89402
CDX89404
CDX94426
CDX94429
CDX99733
CDY08228
CDY13606
CDY24050
CDY26125
CDY33064
CDY40986
CDY49480
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65925.1 CDY08228 AT1G55190.1 21798944
AT5G65925.1 CDY24050 AT1G55190.1 21798944
AT5G65925.1 CDY26125 AT1G55190.1 21798944
AT5G65925.1 CDY33064 AT1G55190.1 21798944
AT5G65925.1 CDX83579 AT3G26030.1 21798944
AT5G65925.1 CDX99733 AT3G26030.1 21798944
AT5G65925.1 CDY13606 AT3G26030.1 21798944
AT5G65925.1 CDY40986 AT3G26030.1 21798944
AT5G65925.1 CDX89402 AT4G25660.1 21798944
AT5G65925.1 CDX89404 AT4G25660.1 21798944
AT5G65925.1 CDX94426 AT4G25660.1 21798944
AT5G65925.1 CDX94429 AT4G25660.1 21798944
AT5G65925.1 CDY49480 AT4G25660.1 21798944
AT5G65925.1 CDY66007 AT4G25660.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024431.1-P Field mustard cytosol, mitochondrion 100.0 100.0
CDY37843 Canola mitochondrion 78.52 75.48
AT5G65925.1 Thale cress cytosol, mitochondrion 73.83 73.33
CDY43586 Canola mitochondrion 75.84 70.62
CDX83099 Canola cytosol 46.31 51.88
CDY53331 Canola cytosol 44.97 50.38
Protein Annotations
EnsemblPlants:CDY08737EnsemblPlantsGene:GSBRNA2T00000662001PANTHER:PTHR33526PANTHER:PTHR33526:SF4ProteinID:CDY08737ProteinID:CDY08737.1
SEG:segUniParc:UPI000253EEB9UniProt:A0A078F6L1MapMan:35.2::
Description
BnaA06g24870DBnaA06g24870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6L1]
Coordinates
chrLK031989:-:72553..73002
Molecular Weight (calculated)
16854.6 Da
IEP (calculated)
10.410
GRAVY (calculated)
-0.434
Length
149 amino acids
Sequence
(BLAST)
001: MKAKEMKKER AIARLMKSPV RFLIMARDAY IRSMTSCSVG FITGGGSGGF GLPAGNFQIC EEPSTTLPRS FTLNTSTTTR ERCRFVTRGG ENRAAMRRPL
101: DLRRNYSCMV MGRIDEEKAC DEFEQEGLLS VSDRFKKRKL CGVFTICQR
Best Arabidopsis Sequence Match ( AT5G65925.1 )
(BLAST)
001: MKAKEMKKES NLARLVKSPV RFLIMARDAY IRSMTSCSAG FIRGGGGSGA FGLPPGNFQI CEAPTTVLPR SFTLNSATTT RERCRFVTRG ASSGEITVET
101: TAMKRQMDLR RNYSCMVMGR IDEEKVCDQF EEEDYSKKRK IGGVFTTHQQ
Arabidopsis Description
At5g65925 [Source:UniProtKB/TrEMBL;Acc:Q6NLB7]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.