CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83579
CDX89402
CDX89404
CDX94426
CDX94429
CDX99733
CDY08228
CDY13606
CDY24050
CDY26125
CDY33064
CDY40986
CDY49480
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65925.1	CDY08228	AT1G55190.1	21798944
AT5G65925.1	CDY24050	AT1G55190.1	21798944
AT5G65925.1	CDY26125	AT1G55190.1	21798944
AT5G65925.1	CDY33064	AT1G55190.1	21798944
AT5G65925.1	CDX83579	AT3G26030.1	21798944
AT5G65925.1	CDX99733	AT3G26030.1	21798944
AT5G65925.1	CDY13606	AT3G26030.1	21798944
AT5G65925.1	CDY40986	AT3G26030.1	21798944
AT5G65925.1	CDX89402	AT4G25660.1	21798944
AT5G65925.1	CDX89404	AT4G25660.1	21798944
AT5G65925.1	CDX94426	AT4G25660.1	21798944
AT5G65925.1	CDX94429	AT4G25660.1	21798944
AT5G65925.1	CDY49480	AT4G25660.1	21798944
AT5G65925.1	CDY66007	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37843	Canola	mitochondrion	90.0	92.9
AT5G65925.1	Thale cress	cytosol, mitochondrion	71.88	76.67
CDY08737	Canola	cytosol, mitochondrion	70.62	75.84
CDX83099	Canola	cytosol	46.88	56.39
CDY53331	Canola	cytosol	44.38	53.38

Protein Annotations

EnsemblPlants:CDY43586	EnsemblPlantsGene:GSBRNA2T00076892001	PANTHER:PTHR33526	PANTHER:PTHR33526:SF4	ProteinID:CDY43586	ProteinID:CDY43586.1
SEG:seg	UniParc:UPI0004EDE796	UniProt:A0A078I1C6	MapMan:35.2	:	:

Description

BnaC02g16830DBnaC02g16830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1C6]

Coordinates

chrLK032561:-:246417..246988

Molecular Weight (calculated)

17971.8 Da

IEP (calculated)

10.364

GRAVY (calculated)

-0.588

Length

160 amino acids

Sequence
(BLAST)

001: MKAKKMKKES NLAKLVKSPV RFLIMARDAY IRSMTSCSAG YIRGGGGSGG FGLPAGNFQI CEEPSTTLPR SFTLNSSTTT AATRERCRFV SDYSRGRGKI
101: TVATGGPLDL RRNYSCIVMG RIDEEKACDK FEEEDLLFDK FKKRKIDKSF YYTSKIKEKK

Best Arabidopsis Sequence Match ( AT5G65925.1 )
(BLAST)

001: MKAKEMKKES NLARLVKSPV RFLIMARDAY IRSMTSCSAG FIRGGGGSGA FGLPPGNFQI CEAPTTVLPR SFTLNSATTT RERCRFVTRG ASSGEITVET
101: TAMKRQMDLR RNYSCMVMGR IDEEKVCDQF EEEDYSKKRK IGGVFTTHQQ

Arabidopsis Description

At5g65925 [Source:UniProtKB/TrEMBL;Acc:Q6NLB7]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.