CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76805
CDX96609
CDY00357
CDY01339
CDY04592
CDY20324
CDY29485
CDY33663
CDY45582
CDY68667

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26030.1	CDX96609	AT1G21010.1	21798944
AT3G26030.1	CDY00357	AT1G21010.1	21798944
AT3G26030.1	CDY01339	AT1G21010.1	21798944
AT3G26030.1	CDY04592	AT1G21010.1	21798944
AT3G26030.1	CDY29485	AT1G21010.1	21798944
AT3G26030.1	CDY33663	AT1G21010.1	21798944
AT3G26030.1	CDX76805	AT2G24550.1	21798944
AT3G26030.1	CDY20324	AT2G24550.1	21798944
AT3G26030.1	CDY45582	AT2G24550.1	21798944
AT3G26030.1	CDY68667	AT2G24550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40986	Canola	nucleus, plastid	92.49	98.11
CDY13606	Canola	cytosol	42.98	91.77
CDX83579	Canola	cytosol	42.98	91.58
AT3G26030.1	Thale cress	cytosol	42.49	90.15
CDX98102	Canola	cytosol, plastid	29.35	64.15
CDY04189	Canola	cytosol, golgi, nucleus	13.54	60.35
CDY30030	Canola	plastid	29.35	59.88
CDY44320	Canola	cytosol, plastid	30.04	59.84
CDY38628	Canola	cytosol, mitochondrion	29.94	59.53
CDY22925	Canola	plastid	28.66	58.7
CDY48287	Canola	plastid	28.56	58.27
CDY09766	Canola	mitochondrion, plastid	26.68	58.06
CDX90593	Canola	cytosol, plastid	26.58	57.97
CDX83578	Canola	cytosol	27.47	57.68
CDY41574	Canola	cytosol	27.17	56.35
CDY54611	Canola	cytosol	27.08	55.92
CDX73997	Canola	cytosol, plastid	26.78	55.42
CDY07942	Canola	cytosol, plastid	26.88	55.4
CDY13605	Canola	cytosol, plastid	27.57	54.81
CDX87083	Canola	cytosol	18.87	54.26
CDY04885	Canola	cytosol, plastid	25.0	52.49
CDY44370	Canola	cytosol, plastid	24.51	51.35
CDY54903	Canola	mitochondrion, plastid	24.21	50.41
CDY05497	Canola	mitochondrion, plastid	24.11	50.31
CDX80521	Canola	plastid	24.21	49.4
CDX88186	Canola	cytosol, plastid	23.91	48.89
CDX67616	Canola	cytosol	23.42	48.47
CDY56962	Canola	cytosol, plastid	23.52	48.37
CDY07514	Canola	cytosol	23.22	48.06
CDY50168	Canola	cytosol	7.61	47.83
CDX73425	Canola	cytosol, plastid	23.62	44.51
CDY08231	Canola	mitochondrion	14.43	43.32
CDY67412	Canola	mitochondrion	13.04	40.74
CDY35507	Canola	golgi	11.96	39.93

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078EK49	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDX99733
ProteinID:CDX99733	ProteinID:CDX99733.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008601
GO:GO:0009987	GO:GO:0019888	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00108358001	InterPro:IPR011989	PFAM:PF01603
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	UniParc:UPI0004EF0A7F	SEG:seg

Description

BnaC02g35870D

Coordinates

chrLK031913:-:538668..544145

Molecular Weight (calculated)

117111.0 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.485

Length

1012 amino acids

Sequence
(BLAST)

0001: MWKQILSKLP NKKSSKNEHH HRGREHGGHS SSSSSSHAST SKSSDNGVGK TKHSQTKERS TASSDVNPKS SANNNNNNNG VFTPYEALPS FKDVPNTEKQ
0101: TLFIKKLNLC RVVFDFTDPT KNIKEKDIKR QTLLELVDYV NSANGKFSEG SVQEVVRMVS ANIFRTLNPQ PRENKVIDAL DLEEEEPSMD LAWPHLQLVY
0201: ELFLRFVASP ETDTKLAKRY IDQSFVLRLL DLFDSEDPRE RDCLKTILHR IYGKFMVHRP FIRKSINHIF YRFVFETEKH NGIAEFLEIL GSIINGFALP
0301: LKEEHKFVEK DCKLADTVIR GLLKYWPVTN SSKEVMFLNE LEEVLEATQP PEFQRCMVPL FRRIARCLNS LHFQAVVVDY RVMKLGNVFG IRRYSLVWPG
0401: ISNRTRLIEL NQNFVSSLCF SLLTCICFGV AERALFLWNN NHIENLIMQS RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFQDLDP EWFKECLAKF
0501: KEDESKEGET KAKREATWKR LEEAGMRKDR KMFKQILGKL PKKPSSAKFW DNSESQPPDN NNQGEEVLTQ RSSSDGDSVS SVEVLPRLRD VPISEKQELF
0601: LKKLRLCCVV FDFVSEPQQN LKEKEIKRQT LLEVVDYVIS SGNNGKFPEP VIQEATKMVS ANLFSSNTHQ QWKKNKTPEG LDLEQEEEGG SLNPSWPHLQ
0701: IVYEFLLRLV ASPNTDAKIS KKYIDPTFVL KLLDLFDSED HREREYLKTI LHRIYGRFMV HRPFIRKTMN NILYDFILET GKHSGIAEFL EVLGSIINGF
0801: ALPLKEEHKL FLTRVLVPLH KLKCLPNYHQ QLSYCVIQFV EKDCKLADTV IRGLLKYWPV TNSSKEIMFL NELEEILEST QGTEFERCMV PLSRQIAQCL
0901: SSSHFQVAER ALYLWNNDHV SSLVRQNSRI ILPIVFPALE KNGSSHWNQA VKNLTENVLK VLSDTNPELF EECLRKFQED QQNAEDNKKK NGETWRQLEE
1001: IVASKGHTSM EK

Best Arabidopsis Sequence Match ( AT3G26030.1 )
(BLAST)

001: MFKQILGKLP KKTSAKFWDN GESQTLDNNN NQGGGDEVLS QRTSSNGDTS LDCVSSFDVL PRLRDVSISE KQELFLKKLR LCCLVFDFVA EPQQNFKEKE
101: IKRQTLLEVV DYVISSGNGK FPESVIQEAT KMISANLFSN PHRQWKNKTP EALDLEEEEG SLNPSWPHLQ IVYEFLLRIV ASPNTDPKIS KKYIDHTFVL
201: KLLDLFDSED PREREYLKTI LHRIYGRFMV HRPFIRKTMN NILYDFIFET GKHSGIAEFL EVLGSIINGF ALPLKEEHKL FLTRVLIPLH KLKCLPNYHQ
301: QLSYCVIQFV EKDCKLADTV IRGMLKYWPV TNSAKEIMFL NELEEILEAT QLTEFERCMV PLSRQIAQCL SSSHFQVAER ALYLWNNDHV TNLVRQNSRI
401: ILPIVFPALE KNGSSHWNQA VKNLTENVLK VLSDTNPDLF EECLHKFQED QQKAEDTKKK NGETWRQLEE IVASMAK

Arabidopsis Description

B'DELTASerine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.