CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05497	Canola	mitochondrion, plastid	97.53	97.73
CDX87083	Canola	cytosol	62.35	86.08
AT5G25510.1	Thale cress	cytosol, mitochondrion, plastid	86.42	84.0
CDX88186	Canola	cytosol, plastid	84.36	82.83
CDX80521	Canola	plastid	84.16	82.46
KRH52526	Soybean	cytosol	71.6	70.02
KRH61853	Soybean	plastid	71.4	69.96
VIT_04s0008g04270.t01	Wine grape	mitochondrion	70.16	69.31
KRH16045	Soybean	cytosol, mitochondrion, plastid	69.96	69.11
KRH05059	Soybean	cytosol, mitochondrion, plastid	69.55	68.7
Solyc06g065690.2.1	Tomato	cytosol, plastid	68.11	66.47
PGSC0003DMT400067211	Potato	cytosol, plastid	67.9	66.27
GSMUA_Achr2P08330_001	Banana	cytosol, mitochondrion	64.2	64.73
TraesCS1A01G382900.2	Wheat	plastid	66.26	64.66
TraesCS1D01G390600.1	Wheat	plastid	66.46	64.6
TraesCS1B01G408600.1	Wheat	plastid	66.26	64.4
EES18643	Sorghum	plastid	65.02	63.07
EES03447	Sorghum	plastid	64.81	63.0
Zm00001d038944_P003	Maize	plastid	64.61	62.67
HORVU3Hr1G022550.2	Barley	cytosol	46.91	59.07
GSMUA_AchrUn_...	Banana	cytosol	57.0	58.81
GSMUA_Achr6P34510_001	Banana	cytosol, plastid	47.12	58.27
Zm00001d009500_P002	Maize	plastid	58.64	57.0
GSMUA_Achr8P26100_001	Banana	cytosol	55.97	56.67
Os05t0555100-01	Rice	plastid	52.26	56.57
CDX98102	Canola	cytosol, plastid	53.7	56.37
CDX90593	Canola	cytosol, plastid	52.67	55.17
Os01t0178400-01	Rice	cytosol	23.25	55.12
CDY22925	Canola	plastid	55.97	55.06
CDY48287	Canola	plastid	55.97	54.84
EES19134	Sorghum	plastid	54.53	54.75
TraesCS1A01G118300.2	Wheat	cytosol, mitochondrion	54.53	54.53
Zm00001d037626_P001	Maize	plastid	54.53	54.53
TraesCS1D01G119400.1	Wheat	cytosol, mitochondrion	54.32	54.32
CDY09766	Canola	mitochondrion, plastid	51.85	54.19
HORVU1Hr1G025690.4	Barley	cytosol, mitochondrion	54.12	54.12
TraesCS3A01G121400.1	Wheat	plastid	53.7	54.04
TraesCS1B01G138000.1	Wheat	cytosol, mitochondrion	53.91	53.91
TraesCS3D01G123500.1	Wheat	plastid	53.5	53.83
CDY38628	Canola	cytosol, mitochondrion	56.17	53.63
CDY44320	Canola	cytosol, plastid	55.97	53.54
TraesCS3B01G140800.1	Wheat	plastid	53.5	53.5
Zm00001d039625_P001	Maize	mitochondrion, plastid	54.53	53.32
Os05t0178400-01	Rice	plasma membrane	53.29	52.75
EES00199	Sorghum	cytosol, mitochondrion, plastid	54.53	52.68
CDY30030	Canola	plastid	53.7	52.62
CDY41574	Canola	cytosol	52.67	52.46
HORVU1Hr1G084450.3	Barley	plastid	66.26	52.27
CDY54611	Canola	cytosol	52.47	52.04
CDY13606	Canola	cytosol	50.21	51.48
CDX83578	Canola	cytosol	51.03	51.45
CDX83579	Canola	cytosol	50.0	51.16
CDX73997	Canola	cytosol, plastid	51.44	51.12
CDY07942	Canola	cytosol, plastid	51.44	50.92
CDY04885	Canola	cytosol, plastid	48.77	49.17
CDY44370	Canola	cytosol, plastid	48.56	48.86
CDY13605	Canola	cytosol, plastid	50.62	48.33
CDY56962	Canola	cytosol, plastid	47.33	46.75
CDX67616	Canola	cytosol	46.09	45.81
CDY07514	Canola	cytosol	45.47	45.19
CDY08231	Canola	mitochondrion	29.63	42.73
CDX73425	Canola	cytosol, plastid	47.12	42.64
CDY67412	Canola	mitochondrion	26.34	39.51
CDY04189	Canola	cytosol, golgi, nucleus	17.9	38.33
CDY35507	Canola	golgi	23.66	37.95
CDY50168	Canola	cytosol	12.35	37.27
CDY40986	Canola	nucleus, plastid	50.0	25.47
CDX99733	Canola	nucleus, plastid	50.41	24.21

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	GO:A0A078IXH5	UniProt:A0A078IXH5	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY54903	ProteinID:CDY54903	ProteinID:CDY54903.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0008601	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00014806001	InterPro:IPR011989	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF13	SUPFAM:SSF48371	UniParc:UPI0004EE2723
SEG:seg	:	:	:	:	:

Description

BnaC02g48620DBnaC02g48620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXH5]

Coordinates

chrLK033359:+:42837..45355

Molecular Weight (calculated)

55153.1 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.020

Length

486 amino acids

Sequence
(BLAST)

001: MFKQFLSKLP RKSSKPDSTS DPSGSSVVRS NSVKRMSSAV FPSSVVAGIE PLVPFKDVPT SEKLNLFVSK LSLCCVTFDF SDQTKNSIEK DVKRQTLLEL
101: LDFVSSSSSS SVRFTEPAIL AMCKMSAVNL FRVFPPSYRE RNDSDDNDPT FEPAWPHLQI VYDLLLKFIT SPCLDAKVAK KYLDHGFILR LLELFDSEDP
201: RERECLKTIL HRVYGKFMVH RPFIRKAMSN IFYSFVFEAE KRGGGGGIAE LLEIFGSIVS GFALPLKEEH KIFLWRVLIP LHKAKSVGGY FHQLSYCVTQ
301: FIDKEPKLGS VVIKGLLKFW PVTNSQKEVM FLGEVEEIVE VMSLVEFQKV MVPLFLRIAC CVNSCHFQVS ERALFLWNND QVVNLIAQNR QAILPIMFTA
401: LEKNAESHWN QSVLNLTLNV RKMFCEMDEA LFMSCHARFQ EDEAEQCSAE EKRKETWARL EKVASMKPVT GKTAVLVTPL ATSIAC

Best Arabidopsis Sequence Match ( AT5G25510.1 )
(BLAST)

001: MFKQFLSKLP RKSSKSDSGE LNRSSSGPVS SPVQRSGTSG GGSGPVRSNS GKRMSSAVFP ASVVAGIEPL VPFKDVPSSE KLNLFVSKVS LCCVTFDFSD
101: PGKNSIEKDV KRQTLLELLD FVASGSVKFT EPAILAMCRM CAVNLFRVFP PNYRSSSGGE NDDDEPMFDP AWPHLQIVYD LLLKFITSPC LDAKVAKKYL
201: DHAFIVRLLD LFDSEDPRER ECLKTILHRV YGKFMVHRPF VRKSMSNIFY RFVFETEKHS GIAELLEIFG SIVSGFALPL KEEHKIFLWR VLIPLHKPKS
301: VGNYFQQLSY CITQFIDKEP KLGSVVIKGL LKFWPITNSQ KEVMFLGEVE EIVEAMSVME FQKIMVPLFL RIACCVTSSH FQVSERALFL WNNDQIVNLI
401: GHNRQAILPI MFTALEKNAQ NHWNQSVLNL TLNVRKMFCE MDEALFMSCH ARFKEDEAKQ CSAAEKRKEV WARLENAASM KPITGKTAVL VTPRATSIAC

Arabidopsis Description

B'KAPPASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform [Source:UniProtKB/Swiss-Prot;Acc:Q93YV6]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.