CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039625_P001	Maize	mitochondrion, plastid	94.04	95.17
Os01t0178400-01	Rice	cytosol	36.38	89.27
HORVU3Hr1G022550.2	Barley	cytosol	67.2	87.56
TraesCS3B01G140800.1	Wheat	plastid	81.71	84.57
TraesCS3D01G123500.1	Wheat	plastid	81.11	84.47
TraesCS3A01G121400.1	Wheat	plastid	80.91	84.27
EES19134	Sorghum	plastid	77.34	80.37
CDX87083	Canola	cytosol	42.74	61.08
EES03447	Sorghum	plastid	57.85	58.2
VIT_04s0008g04270.t01	Wine grape	mitochondrion	56.66	57.93
EES18643	Sorghum	plastid	56.26	56.49
KRH52526	Soybean	cytosol	55.47	56.14
KRH61853	Soybean	plastid	55.27	56.05
AT5G25510.1	Thale cress	cytosol, mitochondrion, plastid	55.07	55.4
KRH05059	Soybean	cytosol, mitochondrion, plastid	53.88	55.08
KRH16045	Soybean	cytosol, mitochondrion, plastid	53.88	55.08
VIT_11s0016g04500.t01	Wine grape	cytosol	58.45	55.06
Solyc06g065690.2.1	Tomato	cytosol, plastid	54.27	54.82
PGSC0003DMT400067211	Potato	cytosol, plastid	54.27	54.82
Bra009846.1-P	Field mustard	plastid	53.88	54.75
CDY05497	Canola	mitochondrion, plastid	52.68	54.64
CDY54903	Canola	mitochondrion, plastid	52.68	54.53
CDX88186	Canola	cytosol, plastid	53.48	54.34
CDX80521	Canola	plastid	53.48	54.23
Bra020504.1-P	Field mustard	mitochondrion, plastid	52.09	53.8
KRH56674	Soybean	cytosol	54.87	53.59
KRH03791	Soybean	cytosol	53.68	52.53
PGSC0003DMT400002753	Potato	plastid	51.49	51.19
Solyc12g006920.1.1	Tomato	plastid	51.49	51.19
KXG26587	Sorghum	mitochondrion	51.69	50.98
OQU79819	Sorghum	cytosol	51.09	48.58
EER93109	Sorghum	cytosol, plastid	49.3	47.78
KXG37844	Sorghum	plastid	49.5	47.52
OQU88848	Sorghum	cytosol	45.73	45.63
EER99281	Sorghum	mitochondrion	32.8	35.03

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	EntrezGene:8078786	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5XMS1
ncoils:Coil	EnsemblPlants:EES00199	ProteinID:EES00199	ProteinID:EES00199.1	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	PFAM:PF01603	PIRSF:PIRSF028043
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF16	EnsemblPlantsGene:SORBI_3003G045000	SUPFAM:SSF48371	UniParc:UPI0001A8452B
RefSeq:XP_002455079.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:4128791..4132084

Molecular Weight (calculated)

57128.9 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.317

Length

503 amino acids

Sequence
(BLAST)

001: MWKQFIGKLS WKAMKSSSGG GGTGSPPAKL PPHLPSPREN GASPRENGAT PKPNVSPPSP AAGAGAGAGA EVRSREDAFV QKVNICCAVY DFSDRGKDSP
101: EKERKRQMLM SLVDCIGAAE EPLTETMIAA CVRMFAANLF RVFPPKVRSG TSTSETEEDE PFFDPSWYHL QVVYEFLLRF VTSPLVDAKV ARKYVDSPFV
201: SKLLDLFDSD DPRERDCLKT ILHRIYGKFM GNRPFIRKAV SNIFYRFVFE TDHHNGIAEL LEVFGSVISG FAKPLKEEHK LFLWKALIPL HKPKSVGVYL
301: PQLTYCITQF IEKEPKLAGT VIRGLLKYWP VTNSQKEIMF LGELEEVLEL TDMAEFQKCM TPLFRKIASC LNSSHFQVAE RALFLWNNEH LFDMISQNRQ
401: VILPIIYPAL ERNTRWHWNQ SVLNVTMNVR KMFREMDERL LLACQNNFQE EEEKRAATEE RRRLMWEQLE RSAARGHHQP VIAADASFPA PPSSARLVAP
501: TVT

Best Arabidopsis Sequence Match ( AT1G13460.1 )
(BLAST)

001: MWKQILSKLP KKSSSKNHSS SSSSTSKSSD NGASKSGNSQ TQNAPPVKPS ADSGFKEGNL KGNGNGFTPY EALPGFKDVP NAEKQNLFVR KLSLCCVVFD
101: FSDPTKNVKE KDIKRQTLLE LVDYVASPNG KFSETVIQEV VRMVSVNIFR TLNPQPRENK VIDALDLEEE EPSMDPTWPH LQLVYEILLR LIASPETDTK
201: LAKKYIDQSF VSRLLDLFDS EDPRERDCLK TVLHRIYGKF MVHRPFIRKS INNIFYRFVF ETEKHNGIAE FLEILGSIIN GFALPLKDEH KVFLVRALVP
301: LHKPKSLQMY HQQLSYCITQ FVEKDCKLAD TVIRGLLKSW PVTNSSKEVM FLNELEEVLE ATQPPEFQRC MVPLFRQVAR CLNSLHFQVA ERALFLWNND
401: HIENLIMQNR KVILPIIFPA LERNTQKHWN QAVHSLTLNV QKIFNDIDAE LFKDCLAKFR EDESKEAEIG AKREATWKRL EEIGNQKQKS SL

Arabidopsis Description

B'THETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8LF36]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.