CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006254_P001	Maize	cytosol	87.26	88.77
Os09t0542700-00	Rice	cytosol	74.31	72.61
HORVU5Hr1G084630.1	Barley	cytosol	69.85	70.45
TraesCS5D01G341500.1	Wheat	cytosol	69.43	69.87
TraesCS5A01G336800.1	Wheat	cytosol	69.21	69.81
TraesCS5B01G335800.1	Wheat	cytosol	69.0	69.0
PGSC0003DMT400008785	Potato	cytosol	41.19	47.67
VIT_03s0038g02850.t01	Wine grape	cytosol	45.22	45.61
GSMUA_Achr3P00600_001	Banana	mitochondrion	47.35	44.78
KRH36100	Soybean	plastid	43.31	44.64
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	41.61	44.34
EES18643	Sorghum	plastid	37.16	34.93
EES19134	Sorghum	plastid	35.88	34.92
EES03447	Sorghum	plastid	36.73	34.6
KXG37844	Sorghum	plastid	38.43	34.54
OQU88848	Sorghum	cytosol	36.09	33.73
EER93109	Sorghum	cytosol, plastid	37.16	33.72
OQU79819	Sorghum	cytosol	37.79	33.65
KXG26587	Sorghum	mitochondrion	36.31	33.53
EES00199	Sorghum	cytosol, mitochondrion, plastid	35.03	32.8

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	EntrezGene:8054985	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5X6Y2
EnsemblPlants:EER99281	ProteinID:EER99281	ProteinID:EER99281.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234
GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56
PANTHER:PTHR10257	PANTHER:PTHR10257:SF28	EnsemblPlantsGene:SORBI_3002G282100	SUPFAM:SSF48371	unigene:Sbi.12906	UniParc:UPI0001A83DFC
RefSeq:XP_002462760.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:66340272..66344085

Molecular Weight (calculated)

52400.2 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.082

Length

471 amino acids

Sequence
(BLAST)

001: MGAAAAEVVA PPRPTSAKRR STTLKFLFEL EKPDGVVPGT AKLPPPSPEP EADSLIDKIA SCNRVFTFAD DAADECEEER DAKRERLVEV LGAVRSSGSA
101: GNKQQQPLDH RVMVALLKMV GANLFRAMPP SAYPALLPPD GVDEETPVMV LAPSWPHLQV VYDILLSVVT ASDAKTLRHH VDRAFLSSLL ALFRSEDPRE
201: RDRLKTVYHQ LYSKLTCERA FMRRSMAAAF LRFVYEASTA ERHCGAAELL EICGSIINGF AVPLKEEHRA FLARVLLPLH RTRWVHTYHR QLAYCVLQFV
301: HKEPGLADAV VTDILRHWPV TNCQKEVLLI EELEEILEVL EPKHFQKLAV PICARIARCV SSYSSQVAER ALYVWNNERF VELATASPGV MEKILPAFVA
401: SVESNLELHW SKCVQQVTAS VKSLLQQVAP DLYARCADEL ATRRSEAEVA AAVRDARWRK LETAAAAAAA K

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.