Factsheet for Solyc01g111790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008785	Potato	cytosol	87.56	95.09
VIT_03s0038g02850.t01	Wine grape	cytosol	65.84	62.31
KRH36100	Soybean	plastid	58.82	56.89
GSMUA_Achr3P00600_001	Banana	mitochondrion	48.87	43.37
HORVU5Hr1G084630.1	Barley	cytosol	44.12	41.76
Zm00001d006254_P001	Maize	cytosol	43.67	41.68
EER99281	Sorghum	mitochondrion	44.34	41.61
TraesCS5D01G341500.1	Wheat	cytosol	43.21	40.81
TraesCS5B01G335800.1	Wheat	cytosol	43.44	40.76
TraesCS5A01G336800.1	Wheat	cytosol	42.53	40.26
Os09t0542700-00	Rice	cytosol	43.21	39.63
Solyc10g083920.1.1	Tomato	nucleus	38.91	34.96
Solyc02g093800.2.1	Tomato	plastid	41.18	34.8
Solyc02g067980.2.1	Tomato	nucleus	40.95	34.54
Solyc09g008400.2.1	Tomato	nucleus	38.24	34.28
Solyc06g065690.2.1	Tomato	cytosol, plastid	38.24	33.94
Solyc05g014340.2.1	Tomato	cytosol	38.01	33.47
Solyc12g006920.1.1	Tomato	plastid	35.97	31.42
Solyc05g055530.2.1	Tomato	cytosol	11.31	23.15

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:K4B441	PFAM:PF01603
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF28	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc01g111790.1	EnsemblPlants:Solyc01g111790.1.1
UniParc:UPI00027678EA	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:97971477..97973079

Molecular Weight (calculated)

51589.8 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.241

Length

442 amino acids

Sequence
(BLAST)

001: MSGLNGNSPR NSPRKTFSPK NSPRKTNTTL KQLLLDSRNM TNFLDSETEE MLSVISYCSF TDPQESPSLQ DLKRLKLIQL LSIIKTLIRP LDDQVLSPLF
101: IMLSSNLFRP LPPPIHSAVS VLLDDDDLIS NPTPSWPHLQ IVYDIFLRIV SRTSVESLRI YIDHAFLLSL LTLFQSEDQR ERDNLKNVFH RIYSKLTFYR
201: PFMRKTMHDV FLHYVFETDQ RHPGIGELLE IWGTIINGFS VPLKEEHKFF LNRVLVPLHK PKGMQVYHRQ LTYCVSQFVQ KEPELGEVVI RGILKYWPIT
301: NCQKEVLFIG ELEELVETVD PQLYKELALP LCTKITKCLN SWNSQVAERA LYVWNNEQFW KMLSQAMEEV FPVLVEGMEK NLQGHWSKSV KELTENVKGM
401: LEALAPFLYS KCLLQLEIQE ASERIEEMRR KEIWEKIENA AM

Best Arabidopsis Sequence Match ( AT4G15415.1 )
(BLAST)

001: MIKQIFGKLP RKPSKSSHND SNPNGEGGVN SYYIPNSGIS SISKPSSKSS ASNSNGANGT VIAPSSTSSN RTNQVNGVYE ALPSFRDVPT SEKPNLFIKK
101: LSMCCVVFDF NDPSKNLREK EIKRQTLLEL VDYIATVSTK LSDAAMQEIA KVAVVNLFRT FPSANHESKI LETLDVDDEE PALEPAWPHL QVVYELLLRF
201: VASPMTDAKL AKRYIDHSFV LKLLDLFDSE DQREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIFE TEKHNGIAEL LEILGSIING FALPLKEEHK
301: LFLIRALIPL HRPKCASAYH QQLSYCIVQF VEKDFKLADT VIRGLLKYWP VTNSSKEVMF LGELEEVLEA TQAAEFQRCM VPLFRQIARC LNSSHFQVAE
401: RALFLWNNDH IRNLITQNHK VIMPIVFPAM ERNTRGHWNQ AVQSLTLNVR KVMAETDQIL FDECLAKFQE DEANETEVVA KREATWKLLE ELAASKSVSN
501: EAVLVPRFSS SVTLATGKTS GS

Arabidopsis Description

B'GAMMASerine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8RW96]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.