Factsheet for Solyc02g093800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052115	Potato	plastid	95.79	96.35
Solyc02g067980.2.1	Tomato	nucleus	85.85	85.69
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	64.44	83.0
KRG94414	Soybean	plastid	78.39	78.39
VIT_14s0219g00010.t01	Wine grape	cytosol	18.55	75.19
KRH57624	Soybean	cytosol, mitochondrion	75.53	73.97
Solyc05g014340.2.1	Tomato	cytosol	70.17	73.11
KRG94343	Soybean	cytosol, plastid	74.76	72.95
Os04t0485100-01	Rice	plasma membrane	70.75	72.69
KXG26587	Sorghum	mitochondrion	69.79	71.57
EER93109	Sorghum	cytosol, plastid	70.75	71.29
HORVU2Hr1G083850.1	Barley	cytosol	67.88	71.0
Os03t0844500-01	Rice	cytosol	70.17	70.99
TraesCS2D01G341400.3	Wheat	mitochondrion	68.07	70.78
TraesCS2B01G362000.2	Wheat	cytosol, mitochondrion	68.07	70.78
TraesCS2A01G320700.2	Wheat	mitochondrion	67.88	70.58
HORVU7Hr1G074840.1	Barley	mitochondrion, plastid	69.6	70.41
Zm00001d043447_P001	Maize	cytosol	23.14	70.35
Os08t0122000-01	Rice	plasma membrane	69.22	70.16
TraesCS7B01G214300.2	Wheat	nucleus	69.02	69.83
HORVU5Hr1G120550.1	Barley	nucleus, plastid	67.88	69.47
TraesCS7D01G310200.1	Wheat	cytosol, plastid	68.64	69.44
TraesCS7A01G313600.1	Wheat	nucleus	68.64	69.44
TraesCS4A01G341600.1	Wheat	plastid	67.69	69.28
TraesCS5B01G533000.1	Wheat	plastid	67.88	69.2
TraesCS5D01G531300.1	Wheat	plastid	67.69	69.01
OQU79819	Sorghum	cytosol	69.02	68.24
Os07t0274800-02	Rice	extracellular, plasma membrane	65.58	66.34
OQU88848	Sorghum	cytosol	63.86	66.27
HORVU0Hr1G004960.2	Barley	cytosol	59.66	62.78
Solyc10g083920.1.1	Tomato	nucleus	56.21	59.76
GSMUA_Achr8P01190_001	Banana	cytosol, mitochondrion, nucleus, plastid	22.37	59.39
Solyc09g008400.2.1	Tomato	nucleus	55.64	59.03
Solyc06g065690.2.1	Tomato	cytosol, plastid	52.01	54.62
Solyc12g006920.1.1	Tomato	plastid	49.71	51.38
Solyc05g055530.2.1	Tomato	cytosol	18.36	44.44
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	34.8	41.18

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:K4BDH6	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc02g093800.2
EnsemblPlants:Solyc02g093800.2.1	UniParc:UPI00027686FF	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:54511147..54516443

Molecular Weight (calculated)

59736.7 Da

IEP (calculated)

7.451

GRAVY (calculated)

-0.340

Length

523 amino acids

Sequence
(BLAST)

001: MIKQILNRLP RKPSKSAENR DGGSSASPSN ASTGSRSSDL STAQSGNSSA TTVSGVTSST LGPNHGNRLP QGANAKVNGS AAVFLCETLP SFKDVPTAEK
101: QNLFIKKLNL CCVLFDFTDP TKHLKEKDIK RQTLIELVDY LSSANGKFTE TVIQEIVKMV SSNLFRSLTP QPRENKVLEA FDLEDDEPLM DPAWPHLQIV
201: YEFFLRFVAS PETDAKLSKR YVDHSFVLRL LDLFDSEDPR EREFLKTVLH RIYGKFMVHR PFIRKSINNI FYRFIFETEK HNGIAELLEI LGSIINGFAL
301: PLKEEHKLFL VRALIPLHKP KCVHMYHQQL SYCITQFVEK DCKLADTVIR GLLKYWPITN SSKEVVFLGE LEEVLEATQP PEFQRCMVPL FHQISRCLSS
401: SHFQVAERAL FLWNNDHVEN LIKQNHRVIL PIIFPSLEKN ARGHWNQAVQ NLTLNVRKIF SDIDSELFEE CLQKFEEDEA QEEEVKRKRE ITWKRLEELA
501: GVKAASNEPV LVSHKITPHP PSG

Best Arabidopsis Sequence Match ( AT3G26020.6 )
(BLAST)

001: MWKQILSKLP NKKSSKHEHR GREHGGHSSS SSHTSGASTS KSTDNGAAKS HAKNASPAGK SAASDSGFKD GNLKSSGNNN NNNNNGVFTP YEALPSFKDV
101: PNTEKQNLFI KKLNLCRVVF DFTDPTKNIK EKDIKRQTLL ELVDYVNSPN GKFSEVGIQE VVRMVSANIF RTLNPQPREN KVIDALDLEE EEPSMDLAWP
201: HLQLVYELFL RFVASPETDT KLAKRYIDQS FVLRLLDLFD SEDPRERDCL KTILHRIYGK FMVHRPFIRK SINNIFYRFV FETEKHNGIA EFLEILGSII
301: NGFALPLKDE HKVFLVRVLI PLHKPKCLQM YHQQLSYCIT QFVEKDCKLA DTVIRGLLKY WPVTNSSKEV MFLNELEEVL EATQPPEFQR CMVPLFRQIA
401: RCLNSLHFQV AERALFLWNN NHIENLIMQN RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFHDLDP ELFKECLAKF KEDESKAAET EAKREATWKR
501: LEELGVRKAS

Arabidopsis Description

Protein phosphatase 2A regulatory B subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.