CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0844500-01	Rice	cytosol	86.71	87.04
TraesCS5D01G531300.1	Wheat	plastid	84.01	84.99
TraesCS4A01G341600.1	Wheat	plastid	83.62	84.93
TraesCS5B01G533000.1	Wheat	plastid	83.81	84.8
HORVU5Hr1G120550.1	Barley	nucleus, plastid	83.43	84.74
Zm00001d034817_P001	Maize	cytosol	94.8	82.83
GSMUA_Achr8P08980_001	Banana	cytosol, mitochondrion	64.16	75.85
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	57.8	73.89
Solyc02g067980.2.1	Tomato	nucleus	73.22	72.52
CDX98102	Canola	cytosol, plastid	64.16	71.92
GSMUA_Achr8P32030_001	Banana	cytosol	66.09	71.31
PGSC0003DMT400052115	Potato	plastid	71.1	70.96
KRG94414	Soybean	plastid	71.48	70.94
Solyc02g093800.2.1	Tomato	plastid	71.29	70.75
KRH57624	Soybean	cytosol, mitochondrion	72.25	70.22
OQU88848	Sorghum	cytosol	68.02	70.04
PGSC0003DMT400017950	Potato	plastid	70.71	70.04
Bra025178.1-P	Field mustard	cytosol, plastid	67.24	69.8
OQU79819	Sorghum	cytosol	71.1	69.75
GSMUA_Achr5P25450_001	Banana	cytosol, mitochondrion, nucleus, plastid	65.51	69.67
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	68.98	69.51
KXG26587	Sorghum	mitochondrion	68.21	69.41
Solyc05g014340.2.1	Tomato	cytosol	66.86	69.12
GSMUA_AchrUn_...	Banana	cytosol	35.07	68.94
PGSC0003DMT400045008	Potato	cytosol, plastid	66.47	68.73
KRG94343	Soybean	cytosol, plastid	70.91	68.66
KRH31415	Soybean	cytosol, plastid	68.59	68.33
Bra019720.1-P	Field mustard	plastid	64.55	67.95
AT1G13460.2	Thale cress	cytosol, plastid	64.35	67.89
CDY30030	Canola	plastid	64.74	67.74
KRG97478	Soybean	cytosol, plastid	67.44	67.7
VIT_14s0219g00010.t01	Wine grape	cytosol	16.76	67.44
CDX83578	Canola	cytosol	62.43	67.22
Bra036352.1-P	Field mustard	cytosol, plastid	67.05	65.78
CDY13605	Canola	cytosol, plastid	62.24	63.46
AT3G26020.4	Thale cress	cytosol, plastid	62.24	61.06
PGSC0003DMT400034814	Potato	cytosol	23.89	58.77
EES18643	Sorghum	plastid	52.99	54.89
KXG37844	Sorghum	plastid	54.34	53.82
EES03447	Sorghum	plastid	51.83	53.8
CDY50168	Canola	cytosol	16.38	52.8
EES19134	Sorghum	plastid	47.4	50.83
EES00199	Sorghum	cytosol, mitochondrion, plastid	47.78	49.3
EER99281	Sorghum	mitochondrion	33.72	37.16

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	UniProt:C5WSZ6	ncoils:Coil
EnsemblPlants:EER93109	ProteinID:EER93109	ProteinID:EER93109.1	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234
GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56
PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	EnsemblPlantsGene:SORBI_3001G015800	SUPFAM:SSF48371	UniParc:UPI0001A82830	RefSeq:XP_002466111.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:1387666..1391790

Molecular Weight (calculated)

59082.3 Da

IEP (calculated)

8.814

GRAVY (calculated)

-0.310

Length

519 amino acids

Sequence
(BLAST)

001: MIKQFLGRLP KKPSKSGDKD PIGRSSPSVS HPSLGPRAGD RAANSSSHPP VISSFGLSYG SGMHVGNANV RAHVNGDSAT SAFLSLPSFK DVPNTEKQSL
101: FIKKLNLCCI QFDFTDPTKN IKEKEIKRQT LVELVDYIAS ATGKFSEASM QEITKMVSAN LFRTLSTPPR ENKVDGFDLD EEEPVMDPAW PHLQIVYELF
201: LRFIQSQETD AKLAKRYIDH SFVLRLLDLF DSEDPREREY LKMILHRVYG KFMVHRPYIR KAINNIFYQF IYETEKHNGI AELLEILGSI INGFALPLKE
301: EHKLFLVRAL IPLHKPKCIA MYHQQLSYCI TQFVEKDCKL ADTVIRGLLK YWPITNSSKE ALFLGELEEI LEATQPAEFQ KCMVPLFRQI ARCLNSSHFQ
401: VAERALFLWN NDHIESLIKQ NSRVILPIIF PALEKNTSGH WNQAVQSLTL NVRKLFSDHD PGLFTECLRK YEEEKAKEKE VKLKQEATWK RLEEIASAKA
501: TSGAAVLVSR PLSRQSSAV

Best Arabidopsis Sequence Match ( AT3G26020.6 )
(BLAST)

001: MWKQILSKLP NKKSSKHEHR GREHGGHSSS SSHTSGASTS KSTDNGAAKS HAKNASPAGK SAASDSGFKD GNLKSSGNNN NNNNNGVFTP YEALPSFKDV
101: PNTEKQNLFI KKLNLCRVVF DFTDPTKNIK EKDIKRQTLL ELVDYVNSPN GKFSEVGIQE VVRMVSANIF RTLNPQPREN KVIDALDLEE EEPSMDLAWP
201: HLQLVYELFL RFVASPETDT KLAKRYIDQS FVLRLLDLFD SEDPRERDCL KTILHRIYGK FMVHRPFIRK SINNIFYRFV FETEKHNGIA EFLEILGSII
301: NGFALPLKDE HKVFLVRVLI PLHKPKCLQM YHQQLSYCIT QFVEKDCKLA DTVIRGLLKY WPVTNSSKEV MFLNELEEVL EATQPPEFQR CMVPLFRQIA
401: RCLNSLHFQV AERALFLWNN NHIENLIMQN RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFHDLDP ELFKECLAKF KEDESKAAET EAKREATWKR
501: LEELGVRKAS

Arabidopsis Description

Protein phosphatase 2A regulatory B subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.