Factsheet for VIT_01s0010g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	62.72	79.56
Solyc05g014340.2.1	Tomato	cytosol	73.79	75.7
PGSC0003DMT400045008	Potato	cytosol, plastid	73.79	75.7
CDX98102	Canola	cytosol, plastid	65.63	73.0
Bra025178.1-P	Field mustard	cytosol, plastid	69.9	72.0
KRG97478	Soybean	cytosol, plastid	71.26	70.99
KRH31415	Soybean	cytosol, plastid	71.65	70.83
Os04t0485100-01	Rice	plasma membrane	69.9	70.73
AT1G13460.2	Thale cress	cytosol, plastid	67.38	70.53
HORVU2Hr1G083850.1	Barley	cytosol	68.35	70.4
TraesCS2D01G341400.3	Wheat	mitochondrion	68.74	70.38
TraesCS2B01G362000.2	Wheat	cytosol, mitochondrion	68.74	70.38
TraesCS2A01G320700.2	Wheat	mitochondrion	68.35	69.98
CDX83578	Canola	cytosol	65.44	69.92
KXG26587	Sorghum	mitochondrion	69.13	69.8
Zm00001d043447_P001	Maize	cytosol	23.11	69.19
Os08t0122000-01	Rice	plasma membrane	69.13	68.99
EER93109	Sorghum	cytosol, plastid	69.51	68.98
Bra019720.1-P	Field mustard	plastid	66.02	68.97
CDY30030	Canola	plastid	66.41	68.95
Os03t0844500-01	Rice	cytosol	69.13	68.86
HORVU5Hr1G120550.1	Barley	nucleus, plastid	67.96	68.49
Bra036352.1-P	Field mustard	cytosol, plastid	70.1	68.24
VIT_14s0219g00010.t01	Wine grape	cytosol	17.09	68.22
TraesCS4A01G341600.1	Wheat	plastid	67.57	68.1
TraesCS5D01G531300.1	Wheat	plastid	67.77	68.03
TraesCS5B01G533000.1	Wheat	plastid	67.57	67.84
HORVU7Hr1G074840.1	Barley	mitochondrion, plastid	67.57	67.31
TraesCS7D01G310200.1	Wheat	cytosol, plastid	67.38	67.12
TraesCS7B01G214300.2	Wheat	nucleus	67.18	66.92
TraesCS7A01G313600.1	Wheat	nucleus	66.99	66.73
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	70.87	66.61
OQU79819	Sorghum	cytosol	68.16	66.35
Os07t0274800-02	Rice	extracellular, plasma membrane	66.21	65.96
CDY13605	Canola	cytosol, plastid	64.85	65.62
OQU88848	Sorghum	cytosol	62.72	64.09
AT3G26020.4	Thale cress	cytosol, plastid	65.05	63.33
HORVU0Hr1G004960.2	Barley	cytosol	60.58	62.78
VIT_13s0019g04920.t01	Wine grape	plastid	54.56	62.17
VIT_08s0007g04850.t01	Wine grape	cytosol	59.61	61.16
VIT_04s0008g04270.t01	Wine grape	mitochondrion	54.37	56.91
GSMUA_Achr8P01190_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.36	55.84
VIT_11s0016g04500.t01	Wine grape	cytosol	55.15	53.18
VIT_03s0038g02850.t01	Wine grape	cytosol	38.06	41.97

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100245943	wikigene:100245943	MapMan:18.4.24.1.2.3	EMBL:AM471561	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CAN66032	ProteinID:CAN66032.1	ProteinID:CCB51230	ProteinID:CCB51230.1	UniProt:F6HG37
EMBL:FN595754	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790
InterPro:IPR011989	EntrezGene:LOC100245943	wikigene:LOC100245943	PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56
PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	TIGR:TC57710	UniParc:UPI00015CB986	ArrayExpress:VIT_01s0010g02350
EnsemblPlantsGene:VIT_01s0010g02350	EnsemblPlants:VIT_01s0010g02350.t01	unigene:Vvi.10899	RefSeq:XP_002266932	RefSeq:XP_002266932.1	:

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:F6HG37]

Coordinates

chr1:-:19401860..19415844

Molecular Weight (calculated)

59004.2 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.265

Length

515 amino acids

Sequence
(BLAST)

001: MIKQIFSKLP RKLSKAVENR ELGGTTAFSN NSNRSRGSDV ESNQFANLNV TSLAASNSTP ITGNNLGSKI PQGGNSKVNG NYMTPNTYEA LPAFRDVPSS
101: EKQNLFIGKL NLCCVVFDFT DPTKNIKEKE IKRQTLLELV DYVTSASGKF TETVMLECVK MVSANLFRAF TTQSCETKAS EGFDLEEEEP SIDPAWPHLQ
201: IVYEFLLRFV ASPESDAKLA KRYIDHSFVL KLLDLFDSED PREREYLKTI LHRVYGKFMV HRPFIRKAIN NIFYRFIFET EKHNGIAELL EILGSIINGF
301: ALPLKEEHKL FLVRALIPLH KPKCLPMYHQ QLSYCISQFV EKDCKLADTV IRGLLKYWPI TNSSKEVMFL SELEEILEAT QPAEFQRCMV PLFHQIARCL
401: NSSHFQVAER ALFLWNNGHI ENLIKQNRGI ILPIIFPALE KNARNHWNQA VHGLTLNVRK IFFDLDPELY KECLLKFQED ESKEDEIKAK REAAWKLLEE
501: MAAKRVASNE AVLVP

Best Arabidopsis Sequence Match ( AT3G26020.6 )
(BLAST)

001: MWKQILSKLP NKKSSKHEHR GREHGGHSSS SSHTSGASTS KSTDNGAAKS HAKNASPAGK SAASDSGFKD GNLKSSGNNN NNNNNGVFTP YEALPSFKDV
101: PNTEKQNLFI KKLNLCRVVF DFTDPTKNIK EKDIKRQTLL ELVDYVNSPN GKFSEVGIQE VVRMVSANIF RTLNPQPREN KVIDALDLEE EEPSMDLAWP
201: HLQLVYELFL RFVASPETDT KLAKRYIDQS FVLRLLDLFD SEDPRERDCL KTILHRIYGK FMVHRPFIRK SINNIFYRFV FETEKHNGIA EFLEILGSII
301: NGFALPLKDE HKVFLVRVLI PLHKPKCLQM YHQQLSYCIT QFVEKDCKLA DTVIRGLLKY WPVTNSSKEV MFLNELEEVL EATQPPEFQR CMVPLFRQIA
401: RCLNSLHFQV AERALFLWNN NHIENLIMQN RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFHDLDP ELFKECLAKF KEDESKAAET EAKREATWKR
501: LEELGVRKAS

Arabidopsis Description

Protein phosphatase 2A regulatory B subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.