Factsheet for VIT_08s0007g04850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96039	Soybean	cytosol, plastid	73.31	78.8
KRH67758	Soybean	plastid	73.11	78.09
Solyc10g083920.1.1	Tomato	nucleus	74.7	76.22
KRH19952	Soybean	cytosol	73.31	76.19
KRH32554	Soybean	cytosol	73.51	75.93
CDY41574	Canola	cytosol	73.71	75.82
AT3G09880.1	Thale cress	cytosol, plastid	75.3	75.75
Bra029801.1-P	Field mustard	cytosol, plastid	73.31	75.72
CDY54611	Canola	cytosol	73.9	75.71
PGSC0003DMT400072691	Potato	cytosol, mitochondrion	74.1	75.61
Bra001296.1-P	Field mustard	cytosol, plastid	73.31	75.26
CDX73997	Canola	cytosol, plastid	73.31	75.26
Solyc09g008400.2.1	Tomato	nucleus	73.9	75.25
CDY07942	Canola	cytosol, plastid	72.91	74.54
AT5G03470.1	Thale cress	cytosol	73.11	74.14
VIT_13s0019g04920.t01	Wine grape	plastid	66.73	74.11
CDY04885	Canola	cytosol, plastid	66.53	69.29
CDY44370	Canola	cytosol, plastid	66.14	68.74
Bra028832.1-P	Field mustard	cytosol, plastid	65.74	68.46
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	50.8	62.81
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	61.16	59.61
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	61.35	56.2
CDY08231	Canola	mitochondrion	37.05	55.19
Bra031075.1-P	Field mustard	mitochondrion	33.67	53.48
CDY67412	Canola	mitochondrion	33.67	52.16
VIT_04s0008g04270.t01	Wine grape	mitochondrion	51.0	52.03
VIT_11s0016g04500.t01	Wine grape	cytosol	52.79	49.63
CDY35507	Canola	golgi	29.88	49.51
VIT_14s0219g00010.t01	Wine grape	cytosol	12.35	48.06
VIT_03s0038g02850.t01	Wine grape	cytosol	37.65	40.47

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100253747	wikigene:100253747	MapMan:18.4.24.1.2.3	UniProt:A5BED9	EMBL:AM456538
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CAN81062	ProteinID:CAN81062.1	ProteinID:CCB55347	ProteinID:CCB55347.1
ncoils:Coil	EMBL:FN595991	GO:GO:0000159	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666
GO:GO:0050790	InterPro:IPR011989	EntrezGene:LOC100253747	wikigene:LOC100253747	PFAM:PF01603	PIRSF:PIRSF028043
InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF45	SUPFAM:SSF48371	TIGR:TC64511	UniParc:UPI00015243C8
ArrayExpress:VIT_08s0007g04850	EnsemblPlantsGene:VIT_08s0007g04850	EnsemblPlants:VIT_08s0007g04850.t01	unigene:Vvi.26298	unigene:Vvi.3424	RefSeq:XP_002268629
RefSeq:XP_002268629.1	SEG:seg	:	:	:	:

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A5BED9]

Coordinates

chr8:-:18797403..18803660

Molecular Weight (calculated)

57887.0 Da

IEP (calculated)

6.952

GRAVY (calculated)

-0.265

Length

502 amino acids

Sequence
(BLAST)

001: MFNKIIKRGH RKPSKADAID SGLYGFGPAG NRNSGMVSTS NVVVNHASRT APALSVVNSA PQPGGAVIDP TALPSGNIDP LPPFRDVAVS DRQLLFLRKL
101: QICCFQFDFT DTLKSVREKE IKRQTLLELI DFIQSGSGKI TENNQEEMIK MISVNIFRCF PPAPHENSGS EMLEIEEEPY AEPAWPHLHL VYELLLRYVV
201: SSDTDTKIAK RYIDHSFVLK LLDLFDADDP REREYLKTIL HRIYGKFMVH RPFIRKAINN IFYRFIYETE RHSGIGELLE ILGSIINGFA LPMKEEHKLF
301: LVRALIPLHK PKALALYHQQ LSYCITQFVE KDYKLADTVI RGLLKYWPIT NCTKELLFLG ELEEVLEATQ SAEFQRCMVP LFRQIGRCLN SSQSQVAERA
401: FFLWKNDHIV SLIAQNRNVI LPIIFEPLEK NVRSHWNQAV HGLTINIRKM FLEMDFDLFE ECQKQHEEME ARARELEEQR ELTWKRLAEA AEQRKGEDGI
501: TV

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.