Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G09880.1 | Thale cress | cytosol, plastid | 84.04 | 83.37 |
| CDY04885 | Canola | cytosol, plastid | 78.99 | 81.12 |
| CDY44370 | Canola | cytosol, plastid | 78.99 | 80.95 |
| Bra028832.1-P | Field mustard | cytosol, plastid | 77.98 | 80.08 |
| KRG96039 | Soybean | cytosol, plastid | 72.53 | 76.87 |
| KRH67758 | Soybean | plastid | 72.73 | 76.6 |
| KRH32554 | Soybean | cytosol | 73.33 | 74.69 |
| KRH19952 | Soybean | cytosol | 72.53 | 74.33 |
| VIT_08s0007g04850.t01 | Wine grape | cytosol | 74.14 | 73.11 |
| Solyc10g083920.1.1 | Tomato | nucleus | 71.72 | 72.15 |
| Solyc09g008400.2.1 | Tomato | nucleus | 71.52 | 71.81 |
| PGSC0003DMT400072691 | Potato | cytosol, mitochondrion | 71.31 | 71.75 |
| CDY08231 | Canola | mitochondrion | 42.02 | 61.72 |
| AT3G54930.2 | Thale cress | cytosol, plastid | 60.0 | 59.76 |
| Bra031075.1-P | Field mustard | mitochondrion | 37.98 | 59.49 |
| CDY67412 | Canola | mitochondrion | 37.58 | 57.41 |
| AT1G13460.2 | Thale cress | cytosol, plastid | 56.77 | 57.11 |
| AT3G26030.1 | Thale cress | cytosol | 53.74 | 55.77 |
| CDY35507 | Canola | golgi | 33.94 | 55.45 |
| AT4G15415.5 | Thale cress | cytosol, plastid | 57.98 | 54.98 |
| AT3G21650.2 | Thale cress | nucleus, plastid | 56.77 | 51.47 |
| AT3G26020.4 | Thale cress | cytosol, plastid | 53.74 | 50.28 |
| AT5G25510.1 | Thale cress | cytosol, mitochondrion, plastid | 50.71 | 50.2 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:18.4.24.1.2.3 | EntrezGene:831828 | UniProt:A0A178UNX1 | ProteinID:AED90609.1 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ArrayExpress:AT5G03470 | EnsemblPlantsGene:AT5G03470 | RefSeq:AT5G03470 | TAIR:AT5G03470 | RefSeq:AT5G03470-TAIR-G |
| EnsemblPlants:AT5G03470.1 | TAIR:AT5G03470.1 | Symbol:ATB' ALPHA | EMBL:BT002933 | ProteinID:CAB83307.1 | ncoils:Coil |
| GO:GO:0000159 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009742 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019888 | GO:GO:0030234 | GO:GO:0042325 | GO:GO:0043666 | GO:GO:0050790 | InterPro:IPR011989 |
| RefSeq:NP_195967.1 | UniProt:O04375 | ProteinID:OAO95518.1 | PFAM:PF01603 | PIRSF:PIRSF028043 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | InterPro:PP2A_B56 | PANTHER:PTHR10257 | PANTHER:PTHR10257:SF46 |
| SUPFAM:SSF48371 | EMBL:U73526 | UniParc:UPI000000BE47 | SEG:seg | : | : |
Description
B'ALPHAATB' ALPHA [Source:UniProtKB/TrEMBL;Acc:A0A178UNX1]
Coordinates
chr5:+:866339..869252
Molecular Weight (calculated)
57539.6 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.351
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKKIMKGAN RKASKAEAND SSMYGFDPPG RSGPGSNMIV NHASRGSLVP SSPNSMAAAT TQPPPMYSVE PLPLFRDVSV SERQSLFLRK LQICCFQFDF
101: TDTLKNAREK EIKRQTLLEL VDFIQSGAGK LTEVCQEEMV KMISVNIFRC LPPASHENTG QEPADLEEEE PYLEPSWPHL QLIYELLLRY IVPSDTDTKV
201: AKRYIDHSFV LRLLELFETE DPREREYLKT ILHRIYGKFM VHRPFIRKAM NHIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRALIPL
301: HKPKPIAMYH QQLSYCIVQF VEKDYKLADT VIRGLLKFWP VTNCTKEVLF LGELEEVLEA TQTVEFQRCM VPLFQQIARC LSSSNFQVAE RALFLWNNEH
401: VVGLIAQNRG VILPIIFASL EKNIESHWNQ AVHGLSANIK RMFMEMDPEL FEECQQQYEE KQAKSKQVEE QRQNRWRRLD EAVEERERED PMITS
101: TDTLKNAREK EIKRQTLLEL VDFIQSGAGK LTEVCQEEMV KMISVNIFRC LPPASHENTG QEPADLEEEE PYLEPSWPHL QLIYELLLRY IVPSDTDTKV
201: AKRYIDHSFV LRLLELFETE DPREREYLKT ILHRIYGKFM VHRPFIRKAM NHIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRALIPL
301: HKPKPIAMYH QQLSYCIVQF VEKDYKLADT VIRGLLKFWP VTNCTKEVLF LGELEEVLEA TQTVEFQRCM VPLFQQIARC LSSSNFQVAE RALFLWNNEH
401: VVGLIAQNRG VILPIIFASL EKNIESHWNQ AVHGLSANIK RMFMEMDPEL FEECQQQYEE KQAKSKQVEE QRQNRWRRLD EAVEERERED PMITS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.