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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • plastid 4
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88186 Canola cytosol, plastid 87.6 88.48
Bra009846.1-P Field mustard plastid 87.2 88.08
CDX80521 Canola plastid 87.0 87.7
CDY54903 Canola mitochondrion, plastid 84.0 86.42
CDY05497 Canola mitochondrion, plastid 83.2 85.77
CDX87083 Canola cytosol 60.0 85.23
Bra020504.1-P Field mustard mitochondrion, plastid 83.0 85.22
KRH61853 Soybean plastid 73.2 73.79
KRH52526 Soybean cytosol 73.0 73.44
VIT_04s0008g04270.t01 Wine grape mitochondrion 72.2 73.37
KRH16045 Soybean cytosol, mitochondrion, plastid 72.0 73.17
KRH05059 Soybean cytosol, mitochondrion, plastid 71.0 72.15
PGSC0003DMT400067211 Potato cytosol, plastid 69.6 69.88
Solyc06g065690.2.1 Tomato cytosol, plastid 69.2 69.48
TraesCS1A01G382900.2 Wheat plastid 67.4 67.67
EES18643 Sorghum plastid 67.4 67.27
TraesCS1B01G408600.1 Wheat plastid 67.2 67.2
TraesCS1D01G390600.1 Wheat plastid 67.0 67.0
EES03447 Sorghum plastid 67.0 67.0
Zm00001d038944_P003 Maize plastid 66.8 66.67
GSMUA_Achr2P08330_001 Banana cytosol, mitochondrion 62.4 64.73
Zm00001d009500_P002 Maize plastid 61.4 61.4
Os05t0555100-01 Rice plastid 54.0 60.13
HORVU3Hr1G022550.2 Barley cytosol 46.4 60.1
GSMUA_AchrUn_... Banana cytosol 56.6 60.08
GSMUA_Achr6P34510_001 Banana cytosol, plastid 46.6 59.29
GSMUA_Achr8P26100_001 Banana cytosol 54.8 57.08
AT1G13460.2 Thale cress cytosol, plastid 55.8 56.71
EES19134 Sorghum plastid 54.4 56.2
Zm00001d037626_P001 Maize plastid 54.6 56.17
Zm00001d039625_P001 Maize mitochondrion, plastid 55.4 55.73
TraesCS3A01G121400.1 Wheat plastid 53.8 55.69
TraesCS3D01G123500.1 Wheat plastid 53.4 55.28
EES00199 Sorghum cytosol, mitochondrion, plastid 55.4 55.07
TraesCS3B01G140800.1 Wheat plastid 53.4 54.94
Os05t0178400-01 Rice plasma membrane 53.8 54.79
TraesCS1A01G118300.2 Wheat cytosol, mitochondrion 53.2 54.73
TraesCS1D01G119400.1 Wheat cytosol, mitochondrion 53.2 54.73
HORVU1Hr1G084450.3 Barley plastid 67.2 54.55
HORVU1Hr1G025690.4 Barley cytosol, mitochondrion 53.0 54.53
TraesCS1B01G138000.1 Wheat cytosol, mitochondrion 52.8 54.32
AT4G15415.5 Thale cress cytosol, plastid 56.4 54.02
Os01t0178400-01 Rice cytosol 22.0 53.66
AT3G09880.1 Thale cress cytosol, plastid 52.0 52.1
AT3G21650.2 Thale cress nucleus, plastid 56.2 51.47
AT3G26030.1 Thale cress cytosol 48.4 50.73
AT5G03470.1 Thale cress cytosol 50.2 50.71
AT3G26020.4 Thale cress cytosol, plastid 51.2 48.39
AT3G54930.2 Thale cress cytosol, plastid 46.6 46.88
Protein Annotations
Gene3D:1.25.10.10MapMan:18.4.24.1.2.3EntrezGene:832626UniProt:A0A178UIY1EMBL:AC006601ProteinID:AED93456.1
InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT5G25510EnsemblPlantsGene:AT5G25510RefSeq:AT5G25510TAIR:AT5G25510
RefSeq:AT5G25510-TAIR-GEnsemblPlants:AT5G25510.1TAIR:AT5G25510.1EMBL:AY059748EMBL:AY142557Unigene:At.21464
GO:GO:0000159GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0019538GO:GO:0019888GO:GO:0030234GO:GO:0043666GO:GO:0050790
InterPro:IPR011989RefSeq:NP_197933.1ProteinID:OAO93768.1PFAM:PF01603PIRSF:PIRSF028043PO:PO:0000013
PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025195PO:PO:0025281InterPro:PP2A_B56PANTHER:PTHR10257PANTHER:PTHR10257:SF13
UniProt:Q93YV6SUPFAM:SSF48371UniParc:UPI00000AC3F7:::
Description
B'KAPPASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform [Source:UniProtKB/Swiss-Prot;Acc:Q93YV6]
Coordinates
chr5:-:8882468..8884838
Molecular Weight (calculated)
56424.8 Da
IEP (calculated)
8.808
GRAVY (calculated)
-0.062
Length
500 amino acids
Sequence
(BLAST)
001: MFKQFLSKLP RKSSKSDSGE LNRSSSGPVS SPVQRSGTSG GGSGPVRSNS GKRMSSAVFP ASVVAGIEPL VPFKDVPSSE KLNLFVSKVS LCCVTFDFSD
101: PGKNSIEKDV KRQTLLELLD FVASGSVKFT EPAILAMCRM CAVNLFRVFP PNYRSSSGGE NDDDEPMFDP AWPHLQIVYD LLLKFITSPC LDAKVAKKYL
201: DHAFIVRLLD LFDSEDPRER ECLKTILHRV YGKFMVHRPF VRKSMSNIFY RFVFETEKHS GIAELLEIFG SIVSGFALPL KEEHKIFLWR VLIPLHKPKS
301: VGNYFQQLSY CITQFIDKEP KLGSVVIKGL LKFWPITNSQ KEVMFLGEVE EIVEAMSVME FQKIMVPLFL RIACCVTSSH FQVSERALFL WNNDQIVNLI
401: GHNRQAILPI MFTALEKNAQ NHWNQSVLNL TLNVRKMFCE MDEALFMSCH ARFKEDEAKQ CSAAEKRKEV WARLENAASM KPITGKTAVL VTPRATSIAC
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.