Factsheet for TraesCS1D01G119400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G118300.2	Wheat	cytosol, mitochondrion	99.18	99.18
HORVU1Hr1G025690.4	Barley	cytosol, mitochondrion	98.56	98.56
TraesCS1B01G138000.1	Wheat	cytosol, mitochondrion	97.74	97.74
EES19134	Sorghum	plastid	85.39	85.74
Zm00001d037626_P001	Maize	plastid	84.36	84.36
Os05t0178400-01	Rice	plasma membrane	84.36	83.5
TraesCS3D01G123500.1	Wheat	plastid	78.4	78.88
CDX87083	Canola	cytosol	44.86	61.93
TraesCS1D01G390600.1	Wheat	plastid	58.23	56.6
TraesCS5D01G394900.1	Wheat	cytosol	12.14	55.14
VIT_04s0008g04270.t01	Wine grape	mitochondrion	55.35	54.67
CDY54903	Canola	mitochondrion, plastid	54.32	54.32
CDY05497	Canola	mitochondrion, plastid	53.91	54.02
Bra020504.1-P	Field mustard	mitochondrion, plastid	53.7	53.59
KRH61853	Soybean	plastid	54.32	53.23
AT5G25510.1	Thale cress	cytosol, mitochondrion, plastid	54.73	53.2
KRH52526	Soybean	cytosol	54.32	53.12
VIT_11s0016g04500.t01	Wine grape	cytosol	58.23	53.0
KRH05059	Soybean	cytosol, mitochondrion, plastid	53.5	52.85
KRH16045	Soybean	cytosol, mitochondrion, plastid	53.29	52.64
Bra009846.1-P	Field mustard	plastid	52.88	51.92
Solyc06g065690.2.1	Tomato	cytosol, plastid	53.09	51.81
PGSC0003DMT400067211	Potato	cytosol, plastid	53.09	51.81
CDX80521	Canola	plastid	52.67	51.61
CDX88186	Canola	cytosol, plastid	52.47	51.52
KRH56674	Soybean	cytosol	53.7	50.68
KRH03791	Soybean	cytosol	52.88	50.0
Solyc12g006920.1.1	Tomato	plastid	51.23	49.21
TraesCS2D01G341400.3	Wheat	mitochondrion	50.62	48.91
TraesCS7D01G310200.1	Wheat	cytosol, plastid	51.85	48.74
PGSC0003DMT400002753	Potato	plastid	50.62	48.62
TraesCS5D01G290200.1	Wheat	cytosol	12.55	48.03
TraesCS5D01G531300.1	Wheat	plastid	50.41	47.76
TraesCS4D01G023700.1	Wheat	mitochondrion	50.62	47.67
TraesCS5D01G341500.1	Wheat	cytosol	31.69	32.91

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0019888	GO:GO:0030234	InterPro:IPR011989
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF16	SUPFAM:SSF48371
EnsemblPlantsGene:TraesCS1D01G119400	EnsemblPlants:TraesCS1D01G119400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:115576175..115578172

Molecular Weight (calculated)

55774.7 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.254

Length

486 amino acids

Sequence
(BLAST)

001: MWKQFLGKLS GKSPKSGGGG GWGSPPPKSP TSYDVNGRQW DSMRASPPLA AIAGAEGETR EDVFLRKLNV CCVLFDFSND RGRDSPERER KRQVLMSLVD
101: CLGTAEEPLT EAMVSACVRM FAINLFRVFP PKVRPGTGAA AEADEDDPFF DPSWYHLQVV YELLLRFVTS PVVDVKVARK YMDNSFISRL LDLLDSDDPR
201: ERDCLKTVLH RIYGKFMGNR PFIRKAVSNI FYRFVSEADR HNGIAELLEV FGSVISGFAK PLKEEHKLFL WKALIPLHKP KTVGMYLPQL TYCITQFIDK
301: EPKLSGTVIR GLLKYWPVTN SQKEMMFLGE LEEVLELTEM PEFQKCMVPL FRRVAHCLNS SHFQVAERAL FLWNNEHLFG LISQNHQVIL PIIYPALERN
401: ARLHWNQSVL NVTMNVRKMF FDMDQKLLLA CQKNFQEEEE KRAATEERRR LIWEHLERNA AFHPVTRDIS FAAFPKPAPL VAPTMT

Best Arabidopsis Sequence Match ( AT1G13460.1 )
(BLAST)

001: MWKQILSKLP KKSSSKNHSS SSSSTSKSSD NGASKSGNSQ TQNAPPVKPS ADSGFKEGNL KGNGNGFTPY EALPGFKDVP NAEKQNLFVR KLSLCCVVFD
101: FSDPTKNVKE KDIKRQTLLE LVDYVASPNG KFSETVIQEV VRMVSVNIFR TLNPQPRENK VIDALDLEEE EPSMDPTWPH LQLVYEILLR LIASPETDTK
201: LAKKYIDQSF VSRLLDLFDS EDPRERDCLK TVLHRIYGKF MVHRPFIRKS INNIFYRFVF ETEKHNGIAE FLEILGSIIN GFALPLKDEH KVFLVRALVP
301: LHKPKSLQMY HQQLSYCITQ FVEKDCKLAD TVIRGLLKSW PVTNSSKEVM FLNELEEVLE ATQPPEFQRC MVPLFRQVAR CLNSLHFQVA ERALFLWNND
401: HIENLIMQNR KVILPIIFPA LERNTQKHWN QAVHSLTLNV QKIFNDIDAE LFKDCLAKFR EDESKEAEIG AKREATWKRL EEIGNQKQKS SL

Arabidopsis Description

B'THETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q8LF36]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.