Factsheet for TraesCS4D01G023700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G026300.1	Wheat	mitochondrion	98.26	98.26
HORVU4Hr1G003930.1	Barley	cytosol, peroxisome	82.17	94.43
KXG37844	Sorghum	plastid	88.37	87.02
Zm00001d013544_P002	Maize	cytosol, plastid	87.6	86.42
Os03t0681800-00	Rice	plasma membrane	88.37	85.23
Zm00001d033370_P001	Maize	plastid	88.76	82.82
GSMUA_Achr7P17010_001	Banana	mitochondrion	61.43	76.94
GSMUA_Achr7P07360_001	Banana	cytosol	61.43	76.39
GSMUA_Achr6P29780_001	Banana	mitochondrion	54.84	75.47
VIT_13s0019g04920.t01	Wine grape	plastid	62.02	70.8
PGSC0003DMT400060086	Potato	cytosol, plastid	60.85	66.11
Bra003201.1-P	Field mustard	golgi	45.93	62.2
KRH35993	Soybean	cytosol	58.33	62.06
TraesCS5D01G394900.1	Wheat	cytosol	12.4	59.81
AT3G54930.2	Thale cress	cytosol, plastid	56.98	59.15
CDY56962	Canola	cytosol, plastid	56.4	59.15
Bra007117.1-P	Field mustard	cytosol, plastid	56.4	59.15
CDX67616	Canola	cytosol	55.62	58.69
CDY07514	Canola	cytosol	55.62	58.69
TraesCS5D01G531300.1	Wheat	plastid	55.04	55.36
TraesCS2D01G341400.3	Wheat	mitochondrion	53.88	55.27
TraesCS7D01G310200.1	Wheat	cytosol, plastid	55.04	54.93
CDX73425	Canola	cytosol, plastid	56.78	54.56
TraesCS1D01G390600.1	Wheat	plastid	50.78	52.4
TraesCS5D01G290200.1	Wheat	cytosol	12.6	51.18
TraesCS1D01G119400.1	Wheat	cytosol, mitochondrion	47.67	50.62
TraesCS3D01G123500.1	Wheat	plastid	46.9	50.1
TraesCS5D01G341500.1	Wheat	cytosol	31.2	34.4

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0019888	GO:GO:0030234	InterPro:IPR011989
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF45	SUPFAM:SSF48371
EnsemblPlantsGene:TraesCS4D01G023700	EnsemblPlants:TraesCS4D01G023700.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:10259640..10265834

Molecular Weight (calculated)

57786.4 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.213

Length

516 amino acids

Sequence
(BLAST)

001: MFNKIIKRGA RKGARGHDAA AAEPRGAAPS SSSGGAAPVT VNHASRASAS PVPPSPTSPH AAAAAAPSPA PAAQQPSLLE PLPLLRDVPA GDRPGLLLRK
101: LRLVAALFDF SDSLKHPREK EAKRQALLEL VDYVQAPTAA ANANAPARLP DAVQEALVAA ISANIFRPLP PALYESAANI DPNATPDDEE EPYLDPAWPH
201: LQLVYELLLR YVVSPDTDTK VAKRYVDHAF VLRLLDHFDS EDPREREYLK TVLHRIYGKF MVHRPFIRKA INNVFYRFIF ETERHNGIGE LLEILGSIIN
301: GFALPMKEEH KLFLSRALIP LHKPKSVGIY HQQLSYCIVQ FVEKDYKLAD AVIRGLLKYW PVINCQKEVL FLGELEEVLE ATQPAEFQRC MVPLFKQIGR
401: CLNSAHFQVA ERALFLWNND HIVSLIAQNR GVIFPIIFEA LERNIQSHWN QAVHGLTANV RKMFLDMDSD LFDECHQQYI EKEEKAKELE EQRESAWRQL
501: EAVAAKASGD DMVLVK

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.