Factsheet for VIT_13s0019g04920.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29780_001	Banana	mitochondrion	58.85	70.93
HORVU4Hr1G003930.1	Barley	cytosol, peroxisome	69.25	69.71
GSMUA_Achr7P17010_001	Banana	mitochondrion	63.5	69.66
PGSC0003DMT400060086	Potato	cytosol, plastid	71.02	67.58
GSMUA_Achr7P07360_001	Banana	cytosol	61.5	66.99
VIT_08s0007g04850.t01	Wine grape	cytosol	74.11	66.73
TraesCS4D01G023700.1	Wheat	mitochondrion	70.8	62.02
Bra003201.1-P	Field mustard	golgi	52.21	61.94
TraesCS4B01G026300.1	Wheat	mitochondrion	70.58	61.82
KRH35993	Soybean	cytosol	65.49	61.03
KXG37844	Sorghum	plastid	70.13	60.5
Os03t0681800-00	Rice	plasma membrane	71.24	60.19
Zm00001d013544_P002	Maize	cytosol, plastid	69.47	60.04
AT3G54930.2	Thale cress	cytosol, plastid	64.38	58.55
Zm00001d033370_P001	Maize	plastid	71.46	58.41
CDX67616	Canola	cytosol	62.61	57.87
CDY07514	Canola	cytosol	62.39	57.67
CDY56962	Canola	cytosol, plastid	62.61	57.52
Bra007117.1-P	Field mustard	cytosol, plastid	62.61	57.52
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	51.55	57.39
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	62.17	54.56
CDX73425	Canola	cytosol, plastid	63.05	53.07
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	62.39	51.46
VIT_04s0008g04270.t01	Wine grape	mitochondrion	53.76	49.39
VIT_14s0219g00010.t01	Wine grape	cytosol	13.5	47.29
VIT_11s0016g04500.t01	Wine grape	cytosol	54.42	46.07
VIT_03s0038g02850.t01	Wine grape	cytosol	41.37	40.04

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100241019	wikigene:100241019	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB56150	ProteinID:CCB56150.1	ncoils:Coil	UniProt:F6HND1	EMBL:FN595998	GO:GO:0000159
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989
EntrezGene:LOC100241019	wikigene:LOC100241019	PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257
PANTHER:PTHR10257:SF45	SUPFAM:SSF48371	UniParc:UPI0002109917	ArrayExpress:VIT_13s0019g04920	EnsemblPlantsGene:VIT_13s0019g04920	EnsemblPlants:VIT_13s0019g04920.t01
unigene:Vvi.19071	RefSeq:XP_002268726	RefSeq:XP_002268726.1	SEG:seg	:	:

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:F6HND1]

Coordinates

chr13:-:6609312..6622006

Molecular Weight (calculated)

52495.8 Da

IEP (calculated)

5.907

GRAVY (calculated)

-0.137

Length

452 amino acids

Sequence
(BLAST)

001: MVSSSVANSV QQAVAVAVAP PSSAVIEPLP LLRDIPVSER PNMFSRKIQI CCFLFDFSDP MNSLREKEIK RQILVELVDF VQSGTGKLSE IMQEELIGMI
101: SVNIFRCLPP ASHENTGSEN LELEEDETSL DPSWPHLQIV YELLLRYVVS SETDTKVAKR YIDHTFGLKL LDLFASEDHR EREYLKTILH RIYGKFMVHR
201: PFIRKAINNI FYRFIFETQR HSGIGELLEI LGSIINGFAL PMKEEHKLFL VRALIPLHKP KSISMYHQQL SYCITQFIEK DYKLADIVIR GLLKYWPVIN
301: CQKEILFLGE LEEVLEGTQS AEFQRCMVPL FRQIGRCLNS PQFQVAERTF FLWNNDHIVS LIAQNRDVIF PIIFESLEKN IRGHWNQAVH GMTANVRRMF
401: LEMDAELFEE CHRQYLEKEA RAQELEEQRQ LTWKRLEAVA AETGGEDMVM VN

Best Arabidopsis Sequence Match ( AT3G09880.1 )
(BLAST)

001: MFKKIMKGGH RKPSKSEANE PSSYGIGLPD NRSGPGSNVV VSHASRGALV NSSPSPVTAT PPPPPLGSVE PLPLFRDVPV SERQTLFLRK LQNCCFLFDF
101: TDTIKNARDK EIKRQTLLEL VDFIQSGSSK ISESCQEEMI KMISVNIFRS LPPASHENTG QEPADPEEEE PYLEPSWPHL QLVYELLLRY VVSTDTDTKV
201: AKRYIDHSFV LKLLDLFDSE DPREREYLKT ILHRIYGKFM VHRPFIRKAI NNIFYRFIYE TERHSGIGEL LEILGSIING FALPMKEEHK LFLIRVLIPL
301: HKPKPIVVYH QQLSYCIVQF VEKDYKLADT VIRGLLKYWP VTNCSKENLF LGELEEVLEA TQPVEFQRCM VPLFQQIGRC LTSSHFQVAE RALFLWNNEH
401: IVGLIAQNRS VILPIIYPTL EKNIQSHWNQ AVHGLTTNIK KMFMEMDPEL FEECQRQYEE KQAKSKEVEE QRQYTWKRLA EAAAERDGGG GEEDHMITS

Arabidopsis Description

B'BETASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform [Source:UniProtKB/Swiss-Prot;Acc:O04376]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.