Factsheet for VIT_04s0008g04270.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61853	Soybean	plastid	74.19	73.59
KRH52526	Soybean	cytosol	73.78	73.04
KRH16045	Soybean	cytosol, mitochondrion, plastid	72.76	72.76
CDX87083	Canola	cytosol	52.03	72.73
AT5G25510.1	Thale cress	cytosol, mitochondrion, plastid	73.37	72.2
KRH05059	Soybean	cytosol, mitochondrion, plastid	71.95	71.95
PGSC0003DMT400067211	Potato	cytosol, plastid	72.76	71.89
Solyc06g065690.2.1	Tomato	cytosol, plastid	72.15	71.29
CDY54903	Canola	mitochondrion, plastid	69.31	70.16
CDY05497	Canola	mitochondrion, plastid	68.9	69.9
Bra020504.1-P	Field mustard	mitochondrion, plastid	68.29	68.99
CDX80521	Canola	plastid	69.31	68.75
CDX88186	Canola	cytosol, plastid	69.11	68.69
Bra009846.1-P	Field mustard	plastid	68.9	68.48
GSMUA_Achr2P08330_001	Banana	cytosol, mitochondrion	66.26	67.63
EES18643	Sorghum	plastid	67.28	66.07
TraesCS1A01G382900.2	Wheat	plastid	66.46	65.66
TraesCS1D01G390600.1	Wheat	plastid	66.67	65.6
TraesCS1B01G408600.1	Wheat	plastid	66.67	65.6
Zm00001d038944_P003	Maize	plastid	66.67	65.47
EES03447	Sorghum	plastid	66.46	65.4
GSMUA_Achr6P34510_001	Banana	cytosol, plastid	50.61	63.36
VIT_11s0016g04500.t01	Wine grape	cytosol	68.7	63.3
GSMUA_AchrUn_...	Banana	cytosol	60.37	63.06
HORVU3Hr1G022550.2	Barley	cytosol	48.58	61.92
GSMUA_Achr8P26100_001	Banana	cytosol	59.35	60.83
Os05t0555100-01	Rice	plastid	54.06	59.24
Zm00001d009500_P002	Maize	plastid	59.55	58.6
EES00199	Sorghum	cytosol, mitochondrion, plastid	57.93	56.66
EES19134	Sorghum	plastid	55.69	56.61
Os05t0178400-01	Rice	plasma membrane	56.1	56.21
Zm00001d039625_P001	Maize	mitochondrion, plastid	56.71	56.14
Zm00001d037626_P001	Maize	plastid	55.28	55.97
TraesCS3A01G121400.1	Wheat	plastid	54.88	55.9
TraesCS3D01G123500.1	Wheat	plastid	54.88	55.9
TraesCS3B01G140800.1	Wheat	plastid	55.08	55.76
Os01t0178400-01	Rice	cytosol	23.17	55.61
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	45.73	55.42
TraesCS1D01G119400.1	Wheat	cytosol, mitochondrion	54.67	55.35
TraesCS1A01G118300.2	Wheat	cytosol, mitochondrion	54.47	55.14
TraesCS1B01G138000.1	Wheat	cytosol, mitochondrion	54.06	54.73
HORVU1Hr1G025690.4	Barley	cytosol, mitochondrion	54.06	54.73
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	56.91	54.37
VIT_13s0019g04920.t01	Wine grape	plastid	49.39	53.76
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	59.15	53.1
HORVU1Hr1G084450.3	Barley	plastid	66.26	52.92
VIT_14s0219g00010.t01	Wine grape	cytosol	13.41	51.16
VIT_08s0007g04850.t01	Wine grape	cytosol	52.03	51.0
VIT_03s0038g02850.t01	Wine grape	cytosol	38.41	40.47

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100250858	wikigene:100250858	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB46746	ProteinID:CCB46746.1	UniProt:F6H3F8	EMBL:FN595231	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019888	GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	EntrezGene:LOC100250858
wikigene:LOC100250858	PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF13
SUPFAM:SSF48371	TIGR:TC61025	UniParc:UPI00015C8C9B	ArrayExpress:VIT_04s0008g04270	EnsemblPlantsGene:VIT_04s0008g04270	EnsemblPlants:VIT_04s0008g04270.t01
unigene:Vvi.8950	RefSeq:XP_002284526	RefSeq:XP_002284526.1	RefSeq:XP_010648553.1	SEG:seg	:

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:F6H3F8]

Coordinates

chr4:-:3643050..3647113

Molecular Weight (calculated)

56110.0 Da

IEP (calculated)

7.685

GRAVY (calculated)

-0.113

Length

492 amino acids

Sequence
(BLAST)

001: MLKQILSRLP RKALKAESGD LVRTDTGTPR SSSGSPGSRP TSAKKTSSVF PTNAVAGVEP SAAFNDVPIA EKLNLFVSKL NLCCTVFDFN DPSKNSIEKD
101: VKRQTLIELV DFMVSGPPRF TEPVIAAMCK MCATNLFRVF PPNYRSNSLG GENDDDEPTF DPAWSHLQLV YDLLLKFVTS SCLDAKVAKK YIDHSFVLRL
201: LDLFDTEDPR ERECLKTVLH RIYGKFMVHR PFIRKSMSNI FYRFVFETER NNGIAEMLEI FGSVISGFAL PLKEEHKIFL WRALIPLHKP KSVGVYFQQL
301: SYCVTQFIEK EPKLASSVIK GLLRYWPITN SQKEVMFLGE LEEILEAINM VEFQKIMVPL FWRIGCCINS FHFQVAERAL FLWNNDQIVN LIAHNRQVLI
401: PVIFPALERN AQSHWNQAVL NLSLNVRKML SEMDDELFLA CHARFKEEES RLNLEAQKRK ETWEQLENEA SLQPVSGNTA VLVTPLATSI TC

Best Arabidopsis Sequence Match ( AT5G25510.1 )
(BLAST)

001: MFKQFLSKLP RKSSKSDSGE LNRSSSGPVS SPVQRSGTSG GGSGPVRSNS GKRMSSAVFP ASVVAGIEPL VPFKDVPSSE KLNLFVSKVS LCCVTFDFSD
101: PGKNSIEKDV KRQTLLELLD FVASGSVKFT EPAILAMCRM CAVNLFRVFP PNYRSSSGGE NDDDEPMFDP AWPHLQIVYD LLLKFITSPC LDAKVAKKYL
201: DHAFIVRLLD LFDSEDPRER ECLKTILHRV YGKFMVHRPF VRKSMSNIFY RFVFETEKHS GIAELLEIFG SIVSGFALPL KEEHKIFLWR VLIPLHKPKS
301: VGNYFQQLSY CITQFIDKEP KLGSVVIKGL LKFWPITNSQ KEVMFLGEVE EIVEAMSVME FQKIMVPLFL RIACCVTSSH FQVSERALFL WNNDQIVNLI
401: GHNRQAILPI MFTALEKNAQ NHWNQSVLNL TLNVRKMFCE MDEALFMSCH ARFKEDEAKQ CSAAEKRKEV WARLENAASM KPITGKTAVL VTPRATSIAC

Arabidopsis Description

B'KAPPASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform [Source:UniProtKB/Swiss-Prot;Acc:Q93YV6]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.