Factsheet for VIT_11s0016g04500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56674	Soybean	cytosol	70.6	73.2
KRH03791	Soybean	cytosol	69.85	72.57
Solyc12g006920.1.1	Tomato	plastid	67.79	71.54
PGSC0003DMT400002753	Potato	plastid	67.79	71.54
GSMUA_Achr2P08330_001	Banana	cytosol, mitochondrion	63.11	69.92
VIT_04s0008g04270.t01	Wine grape	mitochondrion	63.3	68.7
GSMUA_Achr6P34510_001	Banana	cytosol, plastid	49.06	66.67
EES18643	Sorghum	plastid	62.36	66.47
Zm00001d038944_P003	Maize	plastid	62.36	66.47
EES03447	Sorghum	plastid	61.61	65.8
HORVU3Hr1G022550.2	Barley	cytosol	47.19	65.28
GSMUA_AchrUn_...	Banana	cytosol	57.12	64.76
TraesCS1D01G390600.1	Wheat	plastid	60.49	64.6
TraesCS1A01G382900.2	Wheat	plastid	60.11	64.46
TraesCS1B01G408600.1	Wheat	plastid	60.3	64.4
GSMUA_Achr8P26100_001	Banana	cytosol	56.18	62.5
Os01t0178400-01	Rice	cytosol	23.78	61.95
EES19134	Sorghum	plastid	54.12	59.71
Os05t0555100-01	Rice	plastid	49.81	59.24
TraesCS3D01G123500.1	Wheat	plastid	53.56	59.21
TraesCS3A01G121400.1	Wheat	plastid	53.56	59.21
Zm00001d037626_P001	Maize	plastid	53.75	59.05
TraesCS3B01G140800.1	Wheat	plastid	53.75	59.05
Os05t0178400-01	Rice	plasma membrane	53.93	58.66
EES00199	Sorghum	cytosol, mitochondrion, plastid	55.06	58.45
TraesCS1D01G119400.1	Wheat	cytosol, mitochondrion	53.0	58.23
Zm00001d009500_P002	Maize	plastid	54.49	58.2
Zm00001d039625_P001	Maize	mitochondrion, plastid	54.12	58.15
TraesCS1A01G118300.2	Wheat	cytosol, mitochondrion	52.81	58.02
HORVU1Hr1G025690.4	Barley	cytosol, mitochondrion	52.81	58.02
TraesCS1B01G138000.1	Wheat	cytosol, mitochondrion	52.43	57.61
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	43.07	56.65
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	53.18	55.15
VIT_13s0019g04920.t01	Wine grape	plastid	46.07	54.42
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	55.81	54.38
VIT_08s0007g04850.t01	Wine grape	cytosol	49.63	52.79
HORVU1Hr1G084450.3	Barley	plastid	60.86	52.76
VIT_14s0219g00010.t01	Wine grape	cytosol	11.61	48.06
VIT_03s0038g02850.t01	Wine grape	cytosol	34.64	39.61

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100252451	wikigene:100252451	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CBI28127	ProteinID:CBI28127.3	UniProt:D7TBU2	EMBL:FN595756	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	EntrezGene:LOC100252451	wikigene:LOC100252451
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF31	SUPFAM:SSF48371
UniParc:UPI0001BE3210	ArrayExpress:VIT_11s0016g04500	EnsemblPlantsGene:VIT_11s0016g04500	EnsemblPlants:VIT_11s0016g04500.t01	RefSeq:XP_002284853	RefSeq:XP_002284853.2
RefSeq:XP_010656381.1	RefSeq:XP_019078546.1	:	:	:	:

Description

Serine/threonine protein phosphatase 2A regulatory subunit [Source:UniProtKB/TrEMBL;Acc:D7TBU2]

Coordinates

chr11:+:3799268..3803891

Molecular Weight (calculated)

60689.6 Da

IEP (calculated)

8.100

GRAVY (calculated)

-0.131

Length

534 amino acids

Sequence
(BLAST)

001: MLQGRIPVER EIFPGAIFCL TKQRFPSVQH WGIATMIKQI LSKLPRKSSK SDTLASAGSD SNNNTNLGSS IQCSNGLNVV RRMSSAVFPS MVAAGAEAVE
101: PHLSFKDVPN TEKQKLFVSK LNLCCVVYHF NDPDKDQAEK DSKRQALIEL VDFVASGSAK FSEAAIAATC KMCAINLFRD FPPKYRSNST GGETEDEEPM
201: FDPAWSHLQI VYDLLLRFVS YSSLDVKVAK KYVDHSFILR LLELFDSEDP RERDCLKTIL HRIYGKFMVH RPFVRKAVSN IIYRFVFETE RHNGIAELLE
301: IFGSVISGFA LPLKEEHKMF LSRALIPLHK PKSVGIYHQQ LTYCVVQFIE KEPKLASVVI KGLLKYWPVT NSQKELMFLS ELEEILEMTG VVEFQKIMVP
401: LFRRIGCCLN SSHFQVAERA HFLWNNEHVL NHITQNRQVI LPLVFPALER NTRNHWNQAV LNLTLNVRKM FCEMDEELVL ACQGKLEEED SKSSMAAEKR
501: RLTWERLETA ASFQPVGGGN ISFLVNPATC SVTC

Best Arabidopsis Sequence Match ( AT5G25510.1 )
(BLAST)

001: MFKQFLSKLP RKSSKSDSGE LNRSSSGPVS SPVQRSGTSG GGSGPVRSNS GKRMSSAVFP ASVVAGIEPL VPFKDVPSSE KLNLFVSKVS LCCVTFDFSD
101: PGKNSIEKDV KRQTLLELLD FVASGSVKFT EPAILAMCRM CAVNLFRVFP PNYRSSSGGE NDDDEPMFDP AWPHLQIVYD LLLKFITSPC LDAKVAKKYL
201: DHAFIVRLLD LFDSEDPRER ECLKTILHRV YGKFMVHRPF VRKSMSNIFY RFVFETEKHS GIAELLEIFG SIVSGFALPL KEEHKIFLWR VLIPLHKPKS
301: VGNYFQQLSY CITQFIDKEP KLGSVVIKGL LKFWPITNSQ KEVMFLGEVE EIVEAMSVME FQKIMVPLFL RIACCVTSSH FQVSERALFL WNNDQIVNLI
401: GHNRQAILPI MFTALEKNAQ NHWNQSVLNL TLNVRKMFCE MDEALFMSCH ARFKEDEAKQ CSAAEKRKEV WARLENAASM KPITGKTAVL VTPRATSIAC

Arabidopsis Description

B'KAPPASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform [Source:UniProtKB/Swiss-Prot;Acc:Q93YV6]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.