Factsheet for TraesCS1D01G390600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G382900.2	Wheat	plastid	98.2	98.59
TraesCS1B01G408600.1	Wheat	plastid	98.4	98.4
EES18643	Sorghum	plastid	82.2	82.04
Zm00001d038944_P003	Maize	plastid	82.0	81.84
HORVU1Hr1G084450.3	Barley	plastid	97.8	79.38
Os05t0555100-01	Rice	plastid	66.8	74.39
GSMUA_Achr2P08330_001	Banana	cytosol, mitochondrion	70.0	72.61
Zm00001d009500_P002	Maize	plastid	72.4	72.4
GSMUA_Achr6P34510_001	Banana	cytosol, plastid	54.8	69.72
GSMUA_AchrUn_...	Banana	cytosol	65.2	69.21
CDX87083	Canola	cytosol	48.2	68.47
CDY05497	Canola	mitochondrion, plastid	65.0	67.01
KRH52526	Soybean	cytosol	66.6	67.0
AT5G25510.1	Thale cress	cytosol, mitochondrion, plastid	67.0	67.0
KRH16045	Soybean	cytosol, mitochondrion, plastid	65.6	66.67
VIT_04s0008g04270.t01	Wine grape	mitochondrion	65.6	66.67
KRH61853	Soybean	plastid	66.0	66.53
Bra020504.1-P	Field mustard	mitochondrion, plastid	64.8	66.53
CDY54903	Canola	mitochondrion, plastid	64.6	66.46
KRH05059	Soybean	cytosol, mitochondrion, plastid	65.2	66.26
GSMUA_Achr8P26100_001	Banana	cytosol	62.2	64.79
CDX80521	Canola	plastid	64.0	64.52
Bra009846.1-P	Field mustard	plastid	63.6	64.24
CDX88186	Canola	cytosol, plastid	63.6	64.24
Solyc06g065690.2.1	Tomato	cytosol, plastid	61.4	61.65
PGSC0003DMT400067211	Potato	cytosol, plastid	61.4	61.65
VIT_11s0016g04500.t01	Wine grape	cytosol	64.6	60.49
Solyc12g006920.1.1	Tomato	plastid	61.0	60.28
PGSC0003DMT400002753	Potato	plastid	61.0	60.28
KRH56674	Soybean	cytosol	60.0	58.25
TraesCS1D01G119400.1	Wheat	cytosol, mitochondrion	56.6	58.23
KRH03791	Soybean	cytosol	59.8	58.17
TraesCS3D01G123500.1	Wheat	plastid	56.0	57.97
TraesCS5D01G394900.1	Wheat	cytosol	11.8	55.14
TraesCS2D01G341400.3	Wheat	mitochondrion	54.0	53.68
TraesCS5D01G531300.1	Wheat	plastid	54.0	52.63
TraesCS7D01G310200.1	Wheat	cytosol, plastid	52.6	50.87
TraesCS4D01G023700.1	Wheat	mitochondrion	52.4	50.78
TraesCS5D01G290200.1	Wheat	cytosol	12.2	48.03
TraesCS5D01G341500.1	Wheat	cytosol	32.8	35.04

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0019888	GO:GO:0030234	InterPro:IPR011989	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF13	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS1D01G390600
EnsemblPlants:TraesCS1D01G390600.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:462051387..462053493

Molecular Weight (calculated)

55763.4 Da

IEP (calculated)

7.957

GRAVY (calculated)

-0.094

Length

500 amino acids

Sequence
(BLAST)

001: MWKQFLSKLP RTKSTRDGGG GDSGQCSGGG NGNPIQRTSS VPAGGGGRSA STIKRMSSAV FPSSVVAGIE PLVAFKDVPG SERHNLFVSK LGLCCAVFDF
101: SDPAKSSAEK DIKRQTLLDL IDFVDSSSGR FPEAVIAACS RMLAVNLFRV FPPSYRSGAG SSSGGGGEGD EDEPMFDPAW CHLQLVYELL LKFIGSNSLD
201: AKIGKKYFDH SFIVRLLNLL DSEDPRERDS LKTILHRIYG KFMVHRPFIR KAVSNIFYHF VFETQRHNGI AELLEVFGSV ISGFALPLKE EHKIFLWRVL
301: IPLHKPKSVG VYLQQLTYCV TQFLEKDPKL AGSIIIGLLR YWPVTNSQKE VMFLSEIEEI LEATSMVEFQ KCMVPLFRRI AHCINSSHFQ VAERALFMWN
401: NDHIISLVAQ NRQVIMPIIV PALEQNGQNH WNHAVLNLTA NVMKMFSEMD EELFSACLTK CKEDEENQAS MEEKRRLKWA KLESAAALQP VTGHTAVLVG

Best Arabidopsis Sequence Match ( AT5G25510.1 )
(BLAST)

001: MFKQFLSKLP RKSSKSDSGE LNRSSSGPVS SPVQRSGTSG GGSGPVRSNS GKRMSSAVFP ASVVAGIEPL VPFKDVPSSE KLNLFVSKVS LCCVTFDFSD
101: PGKNSIEKDV KRQTLLELLD FVASGSVKFT EPAILAMCRM CAVNLFRVFP PNYRSSSGGE NDDDEPMFDP AWPHLQIVYD LLLKFITSPC LDAKVAKKYL
201: DHAFIVRLLD LFDSEDPRER ECLKTILHRV YGKFMVHRPF VRKSMSNIFY RFVFETEKHS GIAELLEIFG SIVSGFALPL KEEHKIFLWR VLIPLHKPKS
301: VGNYFQQLSY CITQFIDKEP KLGSVVIKGL LKFWPITNSQ KEVMFLGEVE EIVEAMSVME FQKIMVPLFL RIACCVTSSH FQVSERALFL WNNDQIVNLI
401: GHNRQAILPI MFTALEKNAQ NHWNQSVLNL TLNVRKMFCE MDEALFMSCH ARFKEDEAKQ CSAAEKRKEV WARLENAASM KPITGKTAVL VTPRATSIAC

Arabidopsis Description

B'KAPPASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform [Source:UniProtKB/Swiss-Prot;Acc:Q93YV6]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.