Factsheet for Solyc12g006920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002753	Potato	plastid	98.22	98.22
VIT_11s0016g04500.t01	Wine grape	cytosol	71.54	67.79
KRH03791	Soybean	cytosol	66.4	65.37
KRH56674	Soybean	cytosol	66.01	64.85
GSMUA_Achr2P08330_001	Banana	cytosol, mitochondrion	60.28	63.28
Zm00001d038944_P003	Maize	plastid	61.07	61.68
GSMUA_Achr6P34510_001	Banana	cytosol, plastid	47.63	61.32
EES18643	Sorghum	plastid	60.67	61.28
EES03447	Sorghum	plastid	60.28	61.0
TraesCS1D01G390600.1	Wheat	plastid	60.28	61.0
TraesCS1A01G382900.2	Wheat	plastid	59.68	60.64
TraesCS1B01G408600.1	Wheat	plastid	59.88	60.6
GSMUA_AchrUn_...	Banana	cytosol	55.93	60.08
Solyc06g065690.2.1	Tomato	cytosol, plastid	58.5	59.44
GSMUA_Achr8P26100_001	Banana	cytosol	54.94	57.92
HORVU3Hr1G022550.2	Barley	cytosol	43.48	56.99
Zm00001d009500_P002	Maize	plastid	55.53	56.2
Os05t0555100-01	Rice	plastid	49.8	56.12
TraesCS3D01G123500.1	Wheat	plastid	50.0	52.38
TraesCS3A01G121400.1	Wheat	plastid	50.0	52.38
TraesCS3B01G140800.1	Wheat	plastid	50.2	52.26
Os01t0178400-01	Rice	cytosol	21.15	52.2
EES19134	Sorghum	plastid	49.8	52.07
Zm00001d037626_P001	Maize	plastid	49.8	51.85
Os05t0178400-01	Rice	plasma membrane	50.0	51.53
Zm00001d039625_P001	Maize	mitochondrion, plastid	50.59	51.51
EES00199	Sorghum	cytosol, mitochondrion, plastid	51.19	51.49
TraesCS1D01G119400.1	Wheat	cytosol, mitochondrion	49.21	51.23
Solyc02g067980.2.1	Tomato	nucleus	52.96	51.15
TraesCS1A01G118300.2	Wheat	cytosol, mitochondrion	49.01	51.03
HORVU1Hr1G025690.4	Barley	cytosol, mitochondrion	49.01	51.03
TraesCS1B01G138000.1	Wheat	cytosol, mitochondrion	48.62	50.62
Solyc05g014340.2.1	Tomato	cytosol	50.2	50.6
Solyc02g093800.2.1	Tomato	plastid	51.38	49.71
Solyc09g008400.2.1	Tomato	nucleus	48.02	49.29
HORVU1Hr1G084450.3	Barley	plastid	59.88	49.19
Solyc10g083920.1.1	Tomato	nucleus	47.63	48.98
Solyc05g055530.2.1	Tomato	cytosol	16.01	37.5
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	31.42	35.97

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:K4DBM9	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF31	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc12g006920.1
EnsemblPlants:Solyc12g006920.1.1	UniParc:UPI000276AAD9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:1339136..1341924

Molecular Weight (calculated)

57734.9 Da

IEP (calculated)

7.690

GRAVY (calculated)

-0.129

Length

506 amino acids

Sequence
(BLAST)

001: MLKQILAKLP RKSSKCDTFD SSGSNSSNNT SNLGNGIQFT NSCTVIANRL NVVKRMSTAI FPASIVAGGE SVAPHVPFKD VSNAEKQSLF VSKLNLCCTI
101: YDFNDPDKDS AEKDLKRQVL LELNEFVASG SARFTESAIA AVCKMCGVNM FRTFPPKYFS ARGESEDEEP MFDPAWCHLQ LVYDLFLSII GQGSLDAKVA
201: KKYIDHSFIL KLLDLFDSED PRERECLKSV LHRLYGKFMM HRPAIRKAVS NIFYRFAFET ERHNGIAELL EVFGSVISGF ALPLKEEHRL FFSRALLPLH
301: KPKSLGIYHQ QLAYCVVQFI EKEQNLASIV ITRLLRYWPV TSSQKQLMFI SELEEILEMI SIPEFEKIMV PLFRRIGYCL NSSHFQVAER AHFLWNNDNV
401: LNLVMHNRHV IMPIIISALE WNSQNHWNKA VLNLSQNVRK VFSEMDEELV LECQHKLEEE NAKSNVAAER RRLTWERLEI AAKYEPVTVP SNIPGLVKPP
501: TCLVSC

Best Arabidopsis Sequence Match ( AT5G25510.1 )
(BLAST)

001: MFKQFLSKLP RKSSKSDSGE LNRSSSGPVS SPVQRSGTSG GGSGPVRSNS GKRMSSAVFP ASVVAGIEPL VPFKDVPSSE KLNLFVSKVS LCCVTFDFSD
101: PGKNSIEKDV KRQTLLELLD FVASGSVKFT EPAILAMCRM CAVNLFRVFP PNYRSSSGGE NDDDEPMFDP AWPHLQIVYD LLLKFITSPC LDAKVAKKYL
201: DHAFIVRLLD LFDSEDPRER ECLKTILHRV YGKFMVHRPF VRKSMSNIFY RFVFETEKHS GIAELLEIFG SIVSGFALPL KEEHKIFLWR VLIPLHKPKS
301: VGNYFQQLSY CITQFIDKEP KLGSVVIKGL LKFWPITNSQ KEVMFLGEVE EIVEAMSVME FQKIMVPLFL RIACCVTSSH FQVSERALFL WNNDQIVNLI
401: GHNRQAILPI MFTALEKNAQ NHWNQSVLNL TLNVRKMFCE MDEALFMSCH ARFKEDEAKQ CSAAEKRKEV WARLENAASM KPITGKTAVL VTPRATSIAC

Arabidopsis Description

B'KAPPASerine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform [Source:UniProtKB/Swiss-Prot;Acc:Q93YV6]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.