Factsheet for Solyc02g067980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017950	Potato	plastid	95.8	95.8
Solyc02g093800.2.1	Tomato	plastid	85.69	85.85
VIT_14s0171g00530.t01	Wine grape	cytosol, plastid	65.46	84.48
KRG94414	Soybean	plastid	79.01	79.16
VIT_14s0219g00010.t01	Wine grape	cytosol	19.27	78.29
Solyc05g014340.2.1	Tomato	cytosol	72.52	75.7
KRH57624	Soybean	cytosol, mitochondrion	77.1	75.66
KRG94343	Soybean	cytosol, plastid	76.72	75.0
Os04t0485100-01	Rice	plasma membrane	71.95	74.07
KXG26587	Sorghum	mitochondrion	71.76	73.73
EER93109	Sorghum	cytosol, plastid	72.52	73.22
HORVU2Hr1G083850.1	Barley	cytosol	69.47	72.8
TraesCS2B01G362000.2	Wheat	cytosol, mitochondrion	69.66	72.56
TraesCS2A01G320700.2	Wheat	mitochondrion	69.47	72.37
Os08t0122000-01	Rice	plasma membrane	71.18	72.29
TraesCS2D01G341400.3	Wheat	mitochondrion	69.27	72.17
Os03t0844500-01	Rice	cytosol	71.18	72.15
TraesCS4A01G341600.1	Wheat	plastid	70.04	71.82
HORVU5Hr1G120550.1	Barley	nucleus, plastid	70.04	71.82
TraesCS5B01G533000.1	Wheat	plastid	70.04	71.54
TraesCS5D01G531300.1	Wheat	plastid	69.85	71.34
HORVU7Hr1G074840.1	Barley	mitochondrion, plastid	70.23	71.18
TraesCS7B01G214300.2	Wheat	nucleus	70.04	70.99
Zm00001d043447_P001	Maize	cytosol	23.28	70.93
TraesCS7D01G310200.1	Wheat	cytosol, plastid	69.85	70.79
TraesCS7A01G313600.1	Wheat	nucleus	69.66	70.6
OQU79819	Sorghum	cytosol	71.18	70.51
Os07t0274800-02	Rice	extracellular, plasma membrane	67.37	68.28
OQU88848	Sorghum	cytosol	64.12	66.67
HORVU0Hr1G004960.2	Barley	cytosol	60.31	63.58
Solyc10g083920.1.1	Tomato	nucleus	57.25	60.98
GSMUA_Achr8P01190_001	Banana	cytosol, mitochondrion, nucleus, plastid	22.9	60.91
Solyc09g008400.2.1	Tomato	nucleus	56.49	60.04
Solyc06g065690.2.1	Tomato	cytosol, plastid	53.05	55.82
Solyc12g006920.1.1	Tomato	plastid	51.15	52.96
Solyc05g055530.2.1	Tomato	cytosol	19.66	47.69
Solyc01g111790.1.1	Tomato	mitochondrion, plastid	34.54	40.95

Protein Annotations

Gene3D:1.25.10.10	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	UniProt:K4B7D0	PFAM:PF01603
PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc02g067980.2
EnsemblPlants:Solyc02g067980.2.1	UniParc:UPI000276774E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:38040480..38048074

Molecular Weight (calculated)

60062.3 Da

IEP (calculated)

7.838

GRAVY (calculated)

-0.401

Length

524 amino acids

Sequence
(BLAST)

001: MIKQILNRLP RKPSKSGDNR DGGTSAFQSN ASNSSRSSDL SNSRPGNLSA PSLSGVTGSS APGLNHGDRL PQAINAKVNG HAAVFSVEAL PNLKDVPPSE
101: KQNLFIKKLN LCCVLFDFSD PTKNTKEKEI KRQTLVELVD YVTSANGKFT ETVMQEVIKM VSTNLFRPPT PQPRENKVLE GFDLEDDEPM MDPAWPHLQI
201: VYEFLLRFVA SPETDAKLAK RYIDHSFVLR LLDLFDSEDP REREYLKTVL HRIYGKFMVH RPFIRKSINN IFYRFIFETE KHNGIAELLE ILGSIINGFA
301: LPLKEEHKLF LVRALIPLHK PKCVQMYHQQ LSYCITQFVE KDCKLADTVI RGLLKYWPIT NSSKEVMFIG ELEEVLEATQ PPEFQRCMVP LFRRINRCLS
401: SSHFQVAERA LFLWNNDHVE NLIKQNRKVI LPIIFPALEK NARGHWNQAV QSLTLNVRKI FSDVDPELFE ECLRKFEEDE AHEEEDKTKR EMTWKRLEEI
501: AAMKAASNEA VLVSHRITPN SSTG

Best Arabidopsis Sequence Match ( AT3G26020.6 )
(BLAST)

001: MWKQILSKLP NKKSSKHEHR GREHGGHSSS SSHTSGASTS KSTDNGAAKS HAKNASPAGK SAASDSGFKD GNLKSSGNNN NNNNNGVFTP YEALPSFKDV
101: PNTEKQNLFI KKLNLCRVVF DFTDPTKNIK EKDIKRQTLL ELVDYVNSPN GKFSEVGIQE VVRMVSANIF RTLNPQPREN KVIDALDLEE EEPSMDLAWP
201: HLQLVYELFL RFVASPETDT KLAKRYIDQS FVLRLLDLFD SEDPRERDCL KTILHRIYGK FMVHRPFIRK SINNIFYRFV FETEKHNGIA EFLEILGSII
301: NGFALPLKDE HKVFLVRVLI PLHKPKCLQM YHQQLSYCIT QFVEKDCKLA DTVIRGLLKY WPVTNSSKEV MFLNELEEVL EATQPPEFQR CMVPLFRQIA
401: RCLNSLHFQV AERALFLWNN NHIENLIMQN RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFHDLDP ELFKECLAKF KEDESKAAET EAKREATWKR
501: LEELGVRKAS

Arabidopsis Description

Protein phosphatase 2A regulatory B subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.