Factsheet for VIT_14s0171g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043447_P001	Maize	cytosol	28.57	67.44
Solyc02g067980.2.1	Tomato	nucleus	84.48	65.46
PGSC0003DMT400052115	Potato	plastid	83.74	65.38
KRG94414	Soybean	plastid	83.5	64.82
Solyc02g093800.2.1	Tomato	plastid	83.0	64.44
PGSC0003DMT400017950	Potato	plastid	81.77	63.36
KRH57624	Soybean	cytosol, mitochondrion	82.76	62.92
KRG94343	Soybean	cytosol, plastid	83.0	62.87
VIT_01s0010g02350.t01	Wine grape	cytosol, mitochondrion, plastid	79.56	62.72
GSMUA_Achr8P01190_001	Banana	cytosol, mitochondrion, nucleus, plastid	29.06	59.9
Os04t0485100-01	Rice	plasma membrane	74.14	59.14
KXG26587	Sorghum	mitochondrion	74.14	59.02
HORVU2Hr1G083850.1	Barley	cytosol	72.66	59.0
TraesCS2B01G362000.2	Wheat	cytosol, mitochondrion	72.91	58.85
TraesCS2A01G320700.2	Wheat	mitochondrion	72.66	58.65
TraesCS2D01G341400.3	Wheat	mitochondrion	72.41	58.45
TraesCS7B01G214300.2	Wheat	nucleus	74.14	58.22
Os03t0844500-01	Rice	cytosol	74.14	58.22
TraesCS7D01G310200.1	Wheat	cytosol, plastid	74.14	58.22
TraesCS7A01G313600.1	Wheat	nucleus	73.89	58.03
Os08t0122000-01	Rice	plasma membrane	73.65	57.95
HORVU7Hr1G074840.1	Barley	mitochondrion, plastid	73.65	57.83
EER93109	Sorghum	cytosol, plastid	73.89	57.8
OQU79819	Sorghum	cytosol	74.38	57.09
TraesCS4A01G341600.1	Wheat	plastid	71.18	56.56
HORVU5Hr1G120550.1	Barley	nucleus, plastid	71.18	56.56
TraesCS5D01G531300.1	Wheat	plastid	71.43	56.53
TraesCS5B01G533000.1	Wheat	plastid	71.18	56.34
Os07t0274800-02	Rice	extracellular, plasma membrane	70.69	55.51
VIT_12s0059g01170.t01	Wine grape	mitochondrion, plastid	74.38	55.11
OQU88848	Sorghum	cytosol	64.78	52.18
VIT_13s0019g04920.t01	Wine grape	plastid	57.39	51.55
VIT_08s0007g04850.t01	Wine grape	cytosol	62.81	50.8
HORVU0Hr1G004960.2	Barley	cytosol	61.33	50.1
VIT_04s0008g04270.t01	Wine grape	mitochondrion	55.42	45.73
VIT_11s0016g04500.t01	Wine grape	cytosol	56.65	43.07
VIT_03s0038g02850.t01	Wine grape	cytosol	40.15	34.9
VIT_14s0219g00010.t01	Wine grape	cytosol	0.49	1.55

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100250839	wikigene:100250839	MapMan:18.4.24.1.2.3	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB62242	ProteinID:CCB62242.1	UniProt:F6I5M4	EMBL:FN596749	GO:GO:0000159	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019888
GO:GO:0030234	GO:GO:0043666	GO:GO:0050790	InterPro:IPR011989	EntrezGene:LOC100250839	wikigene:LOC100250839
PFAM:PF01603	PIRSF:PIRSF028043	InterPro:PP2A_B56	PANTHER:PTHR10257	PANTHER:PTHR10257:SF46	SUPFAM:SSF48371
UniParc:UPI000210A277	ArrayExpress:VIT_14s0171g00530	EnsemblPlantsGene:VIT_14s0171g00530	EnsemblPlants:VIT_14s0171g00530.t01	RefSeq:XP_002270911	RefSeq:XP_002270911.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:26311114..26313119

Molecular Weight (calculated)

46396.9 Da

IEP (calculated)

8.626

GRAVY (calculated)

-0.309

Length

406 amino acids

Sequence
(BLAST)

001: MIKNILNRLP RKPSKSAENR DGGGASISSS NASTSSRSND LVNNRFGNFN ATSLSGANPT SNSGPNYGNK IPQAVNMKLN GNSAAASYEA LPSFRDVPNS
101: EKQTLFIRKL SLCCVVFDFT DPTKNLKEKE IKRQTLVELV DYVTSANGKF TENVMQEIIK MVSVNLFRTL TSPPRENKVL EAFDLEEEEP SMDPAWSHLQ
201: IVYEFLLRFV ASPETDAKLA KRYIDHSFVL RLLDLFDSED PREREYLKTV LHRIYGKFMV HRPFIRKAIN NIFYRFIFET EKHNGIAELL EILGSIINGF
301: ALPLKEEHKL FLVRALIPLH KPKCIPMYHQ QLSYCITQFV EKDCKLADTV IRGLLKYWPI TNSSKEVMFL GELEEVLEAT QPPEFQRCMV PLFRQIGRCL
401: SSSHFQ

Best Arabidopsis Sequence Match ( AT3G26020.6 )
(BLAST)

001: MWKQILSKLP NKKSSKHEHR GREHGGHSSS SSHTSGASTS KSTDNGAAKS HAKNASPAGK SAASDSGFKD GNLKSSGNNN NNNNNGVFTP YEALPSFKDV
101: PNTEKQNLFI KKLNLCRVVF DFTDPTKNIK EKDIKRQTLL ELVDYVNSPN GKFSEVGIQE VVRMVSANIF RTLNPQPREN KVIDALDLEE EEPSMDLAWP
201: HLQLVYELFL RFVASPETDT KLAKRYIDQS FVLRLLDLFD SEDPRERDCL KTILHRIYGK FMVHRPFIRK SINNIFYRFV FETEKHNGIA EFLEILGSII
301: NGFALPLKDE HKVFLVRVLI PLHKPKCLQM YHQQLSYCIT QFVEKDCKLA DTVIRGLLKY WPVTNSSKEV MFLNELEEVL EATQPPEFQR CMVPLFRQIA
401: RCLNSLHFQV AERALFLWNN NHIENLIMQN RKVILPIIFP ALERNAQKHW NQAVHSLTLN VRKIFHDLDP ELFKECLAKF KEDESKAAET EAKREATWKR
501: LEELGVRKAS

Arabidopsis Description

Protein phosphatase 2A regulatory B subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4JBC4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.